1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtcagtgtcaatgatgaagcgctatattttccttattttccacaatgtaaaccggaaaggtccagcatatgacattcctttactttgtataagGTGTTCTTCGATATCGTGGATCCACGCATTTCACCGAGCAAGCTATGCCAAGTCTTGGAACAGCGCAATGTTCTTGCAATGCCAGCAAGTTCAAAAAG
species | Zea mays |
transcript | GRMZM2G147268_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TAAACAGCTTACGGTGGATTCGTCTTCAGTCGAGACCAATATG GTGTTCTTCGATATCGTGGATCEST: gi|31351308|gb|CD435665.1|CD435665
genomic: TAAACAGCTTACGGTGGATTCGTCTTCAGTCGAGACCAATATGgtcagtgtca ... tttgtataagGTGTTCTTCGATATCGTGGATC
EST: CAAAATTAAACAG-TTCACGGTGGATTCATCTTCGGTCGAGACCAATATG GTGTTCTTTGATATCGTGGATCCACGCATTTCACCGAGCAAGCTATGCCAAEST: gi|71761860|gb|DR959797.1|DR959797
genomic: GAAAATTAAACAGCTT-ACGGTGGATTCGTCTTCAGTCGAGACCAATATGgtcagtgtca ... tttgtataagGTGTTCTTCGATATCGTGGATCCACGCATTTCACCGAGCAAGCTATGCCAA
EST: AGAAAATTAAACAGCTTACGGTGGATTCGTCTTCAGTCGAGACCAATATG GTGTTCTTCGATATCGTGGATCCACGCATTTCACCGAGCAAGCTATGCCAA
genomic: AGAAAATTAAACAGCTTACGGTGGATTCGTCTTCAGTCGAGACCAATATGgtcagtgtca ... tttgtataagGTGTTCTTCGATATCGTGGATCCACGCATTTCACCGAGCAAGCTATGCCAA
tccacaatgtaaaccggaaaggtccagcatatgacattcctttactttgtataagGTGTTCTTCGATATCGTGGATCCACGCATTTCACCGAGCAAGCTATGCCAAGTCTTGGAACAGCGCAATGTTCTTGCAATGCCAGCAAGTTCAAAAAG
cattcctttacttt CT-rich tract
tttactttgtataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagtgtcaatgatgaagcgctatattttccttattttccacaatgtaaaccggaaaggtccagcatatgacattcctttactttgtataagGTGTTCTTCGATATCGTGGATCCACGCATTTCACCGAGCAAGCTATGCCAAGTCTTGGAACAGCGCAATGTTCTTGCAATGCCAGCAAGTTCAAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG