1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TAGCGTCCTCACTCAACCAGCTCTCGGACTCCGAAGTCCTGCTGCGGTGCTCCACCTCTCCAGCCGCAGAACCACCTCACTTCGTGGAAAACGAAAGAAGgtttgtgtgtctacagtgtagacttccctactcctttgcagtttgcagaccataaatactgtcaaactgatttatgactcacagttatcttgttcttagaattatctgtaatttttttcttgtttgtag
species | Zea mays |
transcript | GRMZM2G144362_T06 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TCCACCTCTCCAGCCGCAGAACCACCTCACTTCGTGGAAAACGAAAGAAG GATCTGGAAATACCTGATCGATAACCCGGACTGGGAAGAGACGTTCCCAAAEST: gi|148933495|gb|EC877204.2|EC877204
genomic: TCCACCTCTCCAGCCGCAGAACCACCTCACTTCGTGGAAAACGAAAGAAGgtttgtgtgt ... ttgtttgtagGATCTGGAAATACCTGATCGATAACCCGGACTGGGAAGAGACGTTCCCAAA
EST: TCCACCTCTCCAGCCGCAGAACCACCTCACTTCGTGGAAAACGAAAGAAG GATCTGGAAATACCTGATCGATAACCCGGACTGGGAAGAGACGTTCCCAAAEST: gi|13237097|gb|BG355111.1|BG355111
genomic: TCCACCTCTCCAGCCGCAGAACCACCTCACTTCGTGGAAAACGAAAGAAGgtttgtgtgt ... ttgtttgtagGATCTGGAAATACCTGATCGATAACCCGGACTGGGAAGAGACGTTCCCAAA
EST: TCCACCTCTCCAGCCGCAGAACCACCTCACTTCGTGGAAAACGAAAGAAG GATCTGGAAATACCTGATCGATAACCCGGACTGGGAAGAGACGTTCCCAAAEST: gi|211211873|gb|FL151948.1|FL151948
genomic: TCCACCTCTCCAGCCGCAGAACCACCTCACTTCGTGGAAAACGAAAGAAGgtttgtgtgt ... ttgtttgtagGATCTGGAAATACCTGATCGATAACCCGGACTGGGAAGAGACGTTCCCAAA
EST: TCCACCTCTCCAGCCGCAGAACCACCTCACTTCGTGGAAAACGAAAGAAG GATCTGGAAATACCTGATCGATAACCCGGACTGGGAAGAGACGTTCCCAAAEST: gi|78123130|gb|DV541514.1|DV541514
genomic: TCCACCTCTCCAGCCGCAGAACCACCTCACTTCGTGGAAAACGAAAGAAGgtttgtgtgt ... ttgtttgtagGATCTGGAAATACCTGATCGATAACCCGGACTGGGAAGAGACGTTCCCAAA
EST: TCCACCTCTCCAGCCGCAGAACCACCTCACTTCGTGGAAAACGAAAGAAG GATCTGGAAATACCTGATCGATAACCCGGACTGGGAAGAGACGTTCCCAAAEST: gi|78079634|gb|DV508046.1|DV508046
genomic: TCCACCTCTCCAGCCGCAGAACCACCTCACTTCGTGGAAAACGAAAGAAGgtttgtgtgt ... ttgtttgtagGATCTGGAAATACCTGATCGATAACCCGGACTGGGAAGAGACGTTCCCAAA
EST: TCCACCTCTCCAGCCGCAGAACCACCTCACTTCGTGGAAAACGAAAGAAG GATCTGGAAATACCTGATCGATAACCCGGACTGGGAAGAGACGTTCCCAAAEST: gi|76291843|gb|DV031411.1|DV031411
genomic: TCCACCTCTCCAGCCGCAGAACCACCTCACTTCGTGGAAAACGAAAGAAGgtttgtgtgt ... ttgtttgtagGATCTGGAAATACCTGATCGATAACCCGGACTGGGAAGAGACGTTCCCAAA
EST: TCCACCTCTCCAGCCGCAGAACCACCTCACTTCGTGGAAAACGAAAGAAG GATCTGGAAATACCTGATCGATAACCCGGACTGGGAAGAGACGTTCCCAAAEST: gi|71430540|gb|DR811590.1|DR811590
genomic: TCCACCTCTCCAGCCGCAGAACCACCTCACTTCGTGGAAAACGAAAGAAGgtttgtgtgt ... ttgtttgtagGATCTGGAAATACCTGATCGATAACCCGGACTGGGAAGAGACGTTCCCAAA
EST: TCCACCTCTCCAGCCGCAGAACCACCTCACTTCGTGGAAAACGAAAGAAG GATCTGGAAATACCTGATCGATAACCCGGACTGGGAAGAGACGTTCCCAAAEST: gi|78088518|gb|DV516911.1|DV516911
genomic: TCCACCTCTCCAGCCGCAGAACCACCTCACTTCGTGGAAAACGAAAGAAGgtttgtgtgt ... ttgtttgtagGATCTGGAAATACCTGATCGATAACCCGGACTGGGAAGAGACGTTCCCAAA
EST: TCCACCTCTCCAGCCGCAGAACCACCTCACTTCGTGGAAAACGAAAGAAG GATCTGGAAATACCTGATCGATAACCCGGACTGGGAAGAGACGTTCCCAAAEST: gi|211356743|gb|FL440510.1|FL440510
genomic: TCCACCTCTCCAGCCGCAGAACCACCTCACTTCGTGGAAAACGAAAGAAGgtttgtgtgt ... ttgtttgtagGATCTGGAAATACCTGATCGATAACCCGGACTGGGAAGAGACGTTCCCAAA
EST: CCACCTCTCCAGCCGCAGAACCACNCTM-CTTCGTGGAAAACGAAAGAAG GATCTGGAAATACCTGATCGATAACCCGGACTGGGAAGAGACGTTCCCAAAEST: gi|93281087|gb|EB673351.1|EB673351
genomic: CCACCTCTCCAGCCGCAGAACCAC-CTCACTTCGTGGAAAACGAAAGAAGgtttgtgtgt ... ttgtttgtagGATCTGGAAATACCTGATCGATAACCCGGACTGGGAAGAGACGTTCCCAAA
EST: TCCACCTCTCCAGCCGCAGAACCACCTCACTTCGTGGAAAACGAAAGAAG GATCTGGAAATACCTGATCGATAACCCGGACTGGGAAGAGACGTTCCCAAAEST: gi|93282997|gb|EB675261.1|EB675261
genomic: TCCACCTCTCCAGCCGCAGAACCACCTCACTTCGTGGAAAACGAAAGAAGgtttgtgtgt ... ttgtttgtagGATCTGGAAATACCTGATCGATAACCCGGACTGGGAAGAGACGTTCCCAAA
EST: TCCACCTCTCCAGCCGCAGAACCACCTCACTTCGTGGAAAACGAAAGAAG GATCTGGAAATACCTGATCGATAACCCGGACTGGGAAGAGACGTTCCCAAAEST: gi|86468332|gb|DY234702.1|DY234702
genomic: TCCACCTCTCCAGCCGCAGAACCACCTCACTTCGTGGAAAACGAAAGAAGgtttgtgtgt ... ttgtttgtagGATCTGGAAATACCTGATCGATAACCCGGACTGGGAAGAGACGTTCCCAAA
EST: TCCACCTCTCCAGCCGCAGAACCACCTCACTTCGTGGAAAACGAAAGAAG GATCTGGAAATACCTGATCGATAACCCGGACTGGGAAGAGACGTTCCCAAA
genomic: TCCACCTCTCCAGCCGCAGAACCACCTCACTTCGTGGAAAACGAAAGAAGgtttgtgtgt ... ttgtttgtagGATCTGGAAATACCTGATCGATAACCCGGACTGGGAAGAGACGTTCCCAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAGCGTCCTCACTCAACCAGCTCTCGGACTCCGAAGTCCTGCTGCGGTGCTCCACCTCTCCAGCCGCAGAACCACCTCACTTCGTGGAAAACGAAAGAAGgtttgtgtgtctacagtgtagacttccctactcctttgcagtttgcagaccataaatactgtcaaactgatttatgactcacagttatcttgttcttagaattatctgtaatttttttcttgtttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG