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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gaaaaatatgccactacttactatagcccgcaatttgaaaccttgcatatgtcatttaaaattgaataacacctgagttaatatgtcttttgcgttatagTTAGTTGGCACAGATGAGGCTACTACATGCATTGGTGTTGTAATTCGCAACAACAAGACTGGAAT

Basic information

species Zea mays
transcript GRMZM2G144362_T06
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G144362_T06 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os06g41390.4 (Oryza sativa), 3'ss of exon 2
gaaaaatatgc-cactacttactatagcccgcaatttgaaaccttgcatatgtcat-ttaaaattgaataacacctgagttaatatgt-cttttgcgt-tatagTTAGTTGGCACAGATGAGGCTACTACATGCATTGGTGTTGTAATTCGCAACAACAAGACTGGAAT
      | |||       || ||| |      | | | |  ||| |   ||   || | |  ||     |     |  ||||||   | ||||||| | | |||||||| |||||||||||||  ||||||||| | ||||| ||||||||||||||||||||||||||
----cttttgcatgtctgttgctaaaagttaaattattattcctggaccattcgatgtcagtatattgcactttatatgttaatccattcttttgcatctgtagTTAGTGGGCACAGATGAGGTGACTACATGCGTGGGTGTAGTAATTCGCAACAACAAGACTGGAAT

upper sequence: GRMZM2G144362_T06 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os06g41390.3 (Oryza sativa), 3'ss of exon 2
gaaaaatatgc-cactacttactatagcccgcaatttgaaaccttgcatatgtcat-ttaaaattgaataacacctgagttaatatgt-cttttgcgt-tatagTTAGTTGGCACAGATGAGGCTACTACATGCATTGGTGTTGTAATTCGCAACAACAAGACTGGAAT-----------------------------------
      | |||       || ||| |      | | | |  ||| |   ||   || | |  ||     |     |  ||||||   | ||||||| | | |||||||| |||||||||||||  ||||||||| | ||||| ||||||||||||||||||||||||||                                   
----cttttgcatgtctgttgctaaaagttaaattattattcctggaccattcgatgtcagtatattgcactttatatgttaatccattcttttgcatctgtagTTAGTGGGCACAGATGAGGTGACTACATGCGTGGGTGTAGTAATTCGCAACAACAAGACTGGAATGTAAGTGAAAAAGGAAGTGAGCATTTAAGCTGAAC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76291844|gb|DV031412.1|DV031412
EST:     TCTACGTGTTCCAGCGGGAGTACGCCACGGTGGATCCGGCGCGCGTCGAG                         TTAGTTGGCACAGATGAGGCTACTACATGCATTGGTGTTGTAATTCGCAAC
genomic: TCTACGTGTTCCAGCGGGAGTACGCCACGGTGGATCCGGCGCGCGTCGAGgtgcgtggag ... tgcgttatagTTAGTTGGCACAGATGAGGCTACTACATGCATTGGTGTTGTAATTCGCAAC
EST: gi|94474973|gb|EB703931.1|EB703931
EST:     TCTACGTGTTCCAGCGGGAGTACGCCACGGTGGATCCGGCGCGCGTCGAG                         TTAGTTGGCACAGATGAGGCTACTACATGCATTGGTGTTGTAATTCGCAAC
genomic: TCTACGTGTTCCAGCGGGAGTACGCCACGGTGGATCCGGCGCGCGTCGAGgtgcgtggag ... tgcgttatagTTAGTTGGCACAGATGAGGCTACTACATGCATTGGTGTTGTAATTCGCAAC
EST: gi|76286746|gb|DV026314.1|DV026314
EST:     TCTACGTGTTCCAGCGGGAGTACGCCACGGTGGATCCGGCGCGCGTCGAG                         TTAGTTGGCACAGATGAGGCTACTACATGCATTGGTGTTGTAATTCGCAAC
genomic: TCTACGTGTTCCAGCGGGAGTACGCCACGGTGGATCCGGCGCGCGTCGAGgtgcgtggag ... tgcgttatagTTAGTTGGCACAGATGAGGCTACTACATGCATTGGTGTTGTAATTCGCAAC
EST: gi|71441108|gb|DR822158.1|DR822158
EST:     TCTACGTGTTCCAGCGGGAGTACGCCACGGTGGATCCGGCGCGCGTCGAG                         TTAGTTGGCACAGATGAGGTTACTACATGCATTGGTGTTGTAATTCGCAAC
genomic: TCTACGTGTTCCAGCGGGAGTACGCCACGGTGGATCCGGCGCGCGTCGAGgtgcgtggag ... tgcgttatagTTAGTTGGCACAGATGAGGCTACTACATGCATTGGTGTTGTAATTCGCAAC
EST: gi|78088519|gb|DV516912.1|DV516912
EST:     TCTACGTGTTCCAGCGGGAGTACGCCACGGTGGATCCGGCGCGCGTCGAG                         TTAGTTGGCACAGATGAGGCTACTACATGCATTGGTGTTGTAATTCGCAAC
genomic: TCTACGTGTTCCAGCGGGAGTACGCCACGGTGGATCCGGCGCGCGTCGAGgtgcgtggag ... tgcgttatagTTAGTTGGCACAGATGAGGCTACTACATGCATTGGTGTTGTAATTCGCAAC
EST: gi|78079635|gb|DV508047.1|DV508047
EST:     TCTACGTGTTCCAGCGGGAGTACGCCACGGTGGATCCGGCGCGCGTCGAG                         TTAGTTGGCACAGATGAGGCTACTACATGCATTGGTGTTGTAATTCGCAAC
genomic: TCTACGTGTTCCAGCGGGAGTACGCCACGGTGGATCCGGCGCGCGTCGAGgtgcgtggag ... tgcgttatagTTAGTTGGCACAGATGAGGCTACTACATGCATTGGTGTTGTAATTCGCAAC
EST: gi|148933496|gb|EC877205.2|EC877205
EST:     TCTACGTGTTCCAGCGGGAGTACGCCACGGTGGATCCGGCGCGCGTCGAG                         TTAGTTGGCACAGATGAGGCTACTACATGCATTGGTGTTGTAATTCGCAAC
genomic: TCTACGTGTTCCAGCGGGAGTACGCCACGGTGGATCCGGCGCGCGTCGAGgtgcgtggag ... tgcgttatagTTAGTTGGCACAGATGAGGCTACTACATGCATTGGTGTTGTAATTCGCAAC
EST: gi|148981958|gb|EE028016.2|EE028016
EST:     TCTACGTGTTCCAGCGGGAGTACGCCACGGTGGATCCGGCGCGCGTCGAG                         TTAGTTGGCACAGATGAGGCTACTACATGCATTGGTGTTGTAATTCGCAAC
genomic: TCTACGTGTTCCAGCGGGAGTACGCCACGGTGGATCCGGCGCGCGTCGAGgtgcgtggag ... tgcgttatagTTAGTTGGCACAGATGAGGCTACTACATGCATTGGTGTTGTAATTCGCAAC
EST: gi|91055958|gb|EB166376.1|EB166376
EST:     TCTACGTGTTCCAGCGGGAGTACGCCACGGTGGATCCGGCGCGCGTCGAG                         TTAGTTGGCACAGATGAGGCTACTACATGCATTGGTGTTGTAATTCGCAAC
genomic: TCTACGTGTTCCAGCGGGAGTACGCCACGGTGGATCCGGCGCGCGTCGAGgtgcgtggag ... tgcgttatagTTAGTTGGCACAGATGAGGCTACTACATGCATTGGTGTTGTAATTCGCAAC
EST: gi|89249445|gb|DY621231.1|DY621231
EST:     TCTACGTGTTCCAGCGGGAGTACGCCACGGTGGATCCGGCGCGCGTCGAG                         TTAGTTGGCACAGATGAGGCTACTACATGCATTGGTGTTGTAATTCGCAAC
genomic: TCTACGTGTTCCAGCGGGAGTACGCCACGGTGGATCCGGCGCGCGTCGAGgtgcgtggag ... tgcgttatagTTAGTTGGCACAGATGAGGCTACTACATGCATTGGTGTTGTAATTCGCAAC
EST: gi|94479450|gb|EB708408.1|EB708408
EST:     TCTACGTGTTCCAGCGGGAGTACGCCACGGTGGATCCGGCGCGCGTCGAG                         TTAGTTGGCACAGATGAGGCTACTACATGCATTGGTGTTGTAATTCGCAAC
genomic: TCTACGTGTTCCAGCGGGAGTACGCCACGGTGGATCCGGCGCGCGTCGAGgtgcgtggag ... tgcgttatagTTAGTTGGCACAGATGAGGCTACTACATGCATTGGTGTTGTAATTCGCAAC
EST: gi|148985933|gb|EE029846.2|EE029846
EST:     TCTACGTGTTCCAGCGGGAGTACGCCACGGTGGATCCGGCGCGCGTCGAG                         TTAGTTGGCACAGATGAGGCTACTACATGCATTGGTGTTGTAATTCGCAAC
genomic: TCTACGTGTTCCAGCGGGAGTACGCCACGGTGGATCCGGCGCGCGTCGAGgtgcgtggag ... tgcgttatagTTAGTTGGCACAGATGAGGCTACTACATGCATTGGTGTTGTAATTCGCAAC
EST: gi|149014216|gb|EE043770.2|EE043770
EST:     TCTACGTGTTCCAGCGGGAGTACGCCACGGTGGATCCGGCGCGCGTCGAG                         TTAGTTGGCACAGATGAGGCTACTACATGCATTGGTGTTGTAATTCGCAAC
genomic: TCTACGTGTTCCAGCGGGAGTACGCCACGGTGGATCCGGCGCGCGTCGAGgtgcgtggag ... tgcgttatagTTAGTTGGCACAGATGAGGCTACTACATGCATTGGTGTTGTAATTCGCAAC
EST: gi|71430541|gb|DR811591.1|DR811591
EST:     TCTACGTGTTCCAGCGGGAGTACGCCACGGTGGATCCGGCGCGCGTCGAG                         TTAGTTGGCACAGATGAGGCTACTACATGCATTGGTGTTGTAATTCGCAAC
genomic: TCTACGTGTTCCAGCGGGAGTACGCCACGGTGGATCCGGCGCGCGTCGAGgtgcgtggag ... tgcgttatagTTAGTTGGCACAGATGAGGCTACTACATGCATTGGTGTTGTAATTCGCAAC
EST: gi|93282998|gb|EB675262.1|EB675262
EST:     TCTACGTGTTCCAGCGGGAGTACGCCACGGTGGATCCGGCGCGCGTCGAG                         TTAGTTGGCACAGATGAGGCTACTACATGCATTGGTGTTGTAATTCGCAAC
genomic: TCTACGTGTTCCAGCGGGAGTACGCCACGGTGGATCCGGCGCGCGTCGAGgtgcgtggag ... tgcgttatagTTAGTTGGCACAGATGAGGCTACTACATGCATTGGTGTTGTAATTCGCAAC
EST: gi|76937601|gb|DV175194.1|DV175194
EST:     TCTACGTGTTCCAGCGGGAGTACGCCACGGTGGATCCGGCGCGCGTCGAG                         TTAGTTGGCACAGATGAGGCTACTACATGCATTGGTGTTGTAATTCGCAAC
genomic: TCTACGTGTTCCAGCGGGAGTACGCCACGGTGGATCCGGCGCGCGTCGAGgtgcgtggag ... tgcgttatagTTAGTTGGCACAGATGAGGCTACTACATGCATTGGTGTTGTAATTCGCAAC
EST: gi|93281830|gb|EB674094.1|EB674094
EST:     TCTACGTGTTCCAGCGGGAGTACGCCACGGTGGATCCGGCGCGCGTCGAG                         TTAGTTGGCACAGATGAGGCTACTACATGCATTGGTGTTGTAATTCGCAAC
genomic: TCTACGTGTTCCAGCGGGAGTACGCCACGGTGGATCCGGCGCGCGTCGAGgtgcgtggag ... tgcgttatagTTAGTTGGCACAGATGAGGCTACTACATGCATTGGTGTTGTAATTCGCAAC
EST: gi|71332805|gb|DR803405.1|DR803405
EST:     TCTACGTGTTCCAGCGGGAGTACGCCACGGTGGATCCGGCGCGCGTCGAG                         TTAGTTGGCACAGATGAGGCTACTACATGCATTGGTGTTGTAATTCGCAAC
genomic: TCTACGTGTTCCAGCGGGAGTACGCCACGGTGGATCCGGCGCGCGTCGAGgtgcgtggag ... tgcgttatagTTAGTTGGCACAGATGAGGCTACTACATGCATTGGTGTTGTAATTCGCAAC
EST: gi|50333623|gb|CO528749.1|CO528749
EST:     TCTACGTGTTCCAGCGGGAGTACGCCACGGTGGATCCGGCGCGCGTCGAG                         TTAGTTGGCACAGATGAGGCTACTACATGCATTGGTGTTGTAATTCGCAAC
genomic: TCTACGTGTTCCAGCGGGAGTACGCCACGGTGGATCCGGCGCGCGTCGAGgtgcgtggag ... tgcgttatagTTAGTTGGCACAGATGAGGCTACTACATGCATTGGTGTTGTAATTCGCAAC
EST: gi|78123131|gb|DV541515.1|DV541515
EST:     TCTACGTGTTCCAGCGGGAGTACGCCACGGTGGATCCGGCGCGCGTCGAG                         TTAGTTGGCACAGATGAGGCTACTACGTGCATTGGTGTTGTAATTCGCAAC
genomic: TCTACGTGTTCCAGCGGGAGTACGCCACGGTGGATCCGGCGCGCGTCGAGgtgcgtggag ... tgcgttatagTTAGTTGGCACAGATGAGGCTACTACATGCATTGGTGTTGTAATTCGCAAC
EST: gi|94477309|gb|EB706267.1|EB706267
EST:     TCTACGTGTTCCAGCGGGAGTACGCCACGGTGGATCCGGCGCGCGTCGAG                         TTAGTTGGCACAGATGAGGCTACTACATGCATTGGTGTTGTAATTCGCAAC
genomic: TCTACGTGTTCCAGCGGGAGTACGCCACGGTGGATCCGGCGCGCGTCGAGgtgcgtggag ... tgcgttatagTTAGTTGGCACAGATGAGGCTACTACATGCATTGGTGTTGTAATTCGCAAC
EST: gi|76010683|gb|DT937853.1|DT937853
EST:     TCTACGTGTTCCAGCGGGAGTACGCCACGGTGGATCCGGCGCGCGTCGAG                         TTAGTTGGCACAGATGAGGCTACTACATGCATTGGTGTTGTAATTCGCAAC
genomic: TCTACGTGTTCCAGCGGGAGTACGCCACGGTGGATCCGGCGCGCGTCGAGgtgcgtggag ... tgcgttatagTTAGTTGGCACAGATGAGGCTACTACATGCATTGGTGTTGTAATTCGCAAC
EST: gi|71449941|gb|DR830991.1|DR830991
EST:     TCTACGTGTTCCAGCGGGAGTACGCCACGGTGGATCCGGCGCGCGTCGAG                         TTAGTTGGCACAGATGAGGCTACTACATGCATTGGTGTTGTAATTCGCAAC
genomic: TCTACGTGTTCCAGCGGGAGTACGCCACGGTGGATCCGGCGCGCGTCGAGgtgcgtggag ... tgcgttatagTTAGTTGGCACAGATGAGGCTACTACATGCATTGGTGTTGTAATTCGCAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catatgtcatttaaaattgaataacacctgagttaatatgtcttttgcgttatagTTAGTTGGCACAGATGAGGCTACTACATGCATTGGTGTTGTAATTCGCAACAACAAGACTGGAAT
                                      tgtctttt  CT-rich tract
      tcatttaaaattgaat  TA-rich tract