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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCTGGAAATACCTGATCGATa

Basic information

species Zea mays
transcript GRMZM2G144362_T05
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86468332|gb|DY234702.1|DY234702
EST:     AAGGATCTGGAAATACCTGATCGAT                         AACCCGGACTGGGAAGAGACGTTCCCAAAACACAAGCCCCGGGTGTTCCAT
genomic: AAGGATCTGGAAATACCTGATCGATa ... aA-CCCGGACTGGGAAGAGACGTTCCCAAAACACAAGCCCCGGGTGTTCCATAGGGCAAGCGACGGAAGC
EST: gi|71430540|gb|DR811590.1|DR811590
EST:     AAGGATCTGGAAATACCTGATCGAT                         A
genomic: AAGGATCTGGAAATACCTGATCGATa ... a-a ... aACCCGGACTGG
EST: gi|71430540|gb|DR811590.1|DR811590
EST:     AAGGATCTGGAAATACCTGATCGAT                         A
genomic: AAGGATCTGGAAATACCTGATCGATa ... a-a ... aACCCGGACTGG
EST: gi|211211873|gb|FL151948.1|FL151948
EST:     AAGGATCTGGAAATACCTGATCGAT                         AACCCGGACTGGGAAGAGACGTTCCCAAAACACAAGCCCCGGGTGTTCCAT
genomic: AAGGATCTGGAAATACCTGATCGATa ... aA-CCCGGACTGGGAAGAGACGTTCCCAAAACACAAGCCCCGGGTGTTCCATAGGG
EST: gi|149014215|gb|EE043769.2|EE043769
EST:     AAGGATCTGGAAATACCTGATCGAT                         AACCCGGACTGGGAAGAGACGTTCCCAAAACACAAGCCCCGGGTGTTCCAT
genomic: AAGGATCTGGAAATACCTGATCGATa ... aA-CCCGGACTGGGAAGAGACGTTCCCAAAACACAAGCCCCGGGTGTTCCATAGGGCAAGCGACGGAAGC
EST: gi|93281087|gb|EB673351.1|EB673351
EST:     AAGGATCTGGAAATACCTGATCGAT                         AACCCGGACTGGGAAGAGACGTTCCCAAAACACAAGCCCCGGGTGTTCCAT
genomic: AAGGATCTGGAAATACCTGATCGATa ... aA-CCCGGACTGGGAAGAGACGTTCCCAAAACACAAGCCCCGGGTGTTCCATAGGGCAAGCGACGGAAGC
EST: gi|148933495|gb|EC877204.2|EC877204
EST:     AAGGATCTGGAAATACCTGATCGAT                         AACCCGGACTGGGAAGAGACGTTCCCAAAACACAAGCCCCGGGTGTTCCAT
genomic: AAGGATCTGGAAATACCTGATCGATa ... aA-CCCGGACTGGGAAGAGACGTTCCCAAAACACAAGCCCCGGGTGTTCCATAGGGCAAGCGACGGAAGC
EST: gi|78123130|gb|DV541514.1|DV541514
EST:     AAGGATCTGGAAATACCTGATCGAT                         AACCCGGACTGGGAAGAGACGTTCCCAAAACACAAGCCCCGGGTGTTCCAT
genomic: AAGGATCTGGAAATACCTGATCGATa ... aA-CCCGGACTGGGAAGAGACGTTCCCAAAACACAAGCCCCGGGTGTTCCATAGGGCAAGCGACGGAAGC
EST: gi|76291843|gb|DV031411.1|DV031411
EST:     AAGGATCTGGAAATACCTGATCGAT                         AACCCGGACTGGGAAGAGACGTTCCCAAAACACAAGCCCCGGGTGTTCCAT
genomic: AAGGATCTGGAAATACCTGATCGATa ... aA-CCCGGACTGGGAAGAGACGTTCCCAAAACACAAGCCCCGGGTGTTCCATAGGGCAAGCGACGGAAGC
EST: gi|93282997|gb|EB675261.1|EB675261
EST:     AAGGATCTGGAAATACCTGATCGAT                         AACCCGGACTGGGAAGAGACGTTCCCAAAACACAAGCCCCGGGTGTTCCAT
genomic: AAGGATCTGGAAATACCTGATCGATa ... aA-CCCGGACTGGGAAGAGACGTTCCCAAAACACAAGCCCCGGGTGTTCCATAGGGCAAGCGACGGAAGC
EST: gi|78079634|gb|DV508046.1|DV508046
EST:     AAGGATCTGGAAATACCTGATCGAT                         AACCCGGACTGGGAAGAGACGTTCCCAAAACACAAGCCCCGGGTGTTCCAT
genomic: AAGGATCTGGAAATACCTGATCGATa ... aA-CCCGGACTGGGAAGAGACGTTCCCAAAACACAAGCCCCGGGTGTTCCATAGGGCAAGCGACGGAAGC
EST: gi|13237097|gb|BG355111.1|BG355111
EST:     AAGGATCTGGAAATACCTGATCGAT                         AACCCGGACTGGGAAGAGACGTTCCCAAAACACAAGCCCCGGGTGTTCCAT
genomic: AAGGATCTGGAAATACCTGATCGATa ... aA-CCCGGACTGGGAAGAGACGTTCCCAAAACACAAGCCCCGGGTGTTCCATAGGGCAAGCGACGGAAGC
EST: gi|78088518|gb|DV516911.1|DV516911
EST:     AAGGATCTGGAAATACCTGATCGAT                         AACCCGGACTGGGAAGAGACGTTCCCAAAACACAAGCCCCGGGTGTTCCAT
genomic: AAGGATCTGGAAATACCTGATCGATa ... aA-CCCGGACTGGGAAGAGACGTTCCCAAAACACAAGCCCCGGGTGTTCCATAGGGCAAGCGACGGAAGC
EST: gi|211356743|gb|FL440510.1|FL440510
EST:     AAGGATCTGGAAATACCTGATCGAT                         AACCCGGACTGGGAAGAGACGTTCCCAAAACACAAGCCCCGGGTGTTCCAT
genomic: AAGGATCTGGAAATACCTGATCGATa ... aA-CCCGGACTGGGAAGAGACGTTCCCAAAACACAAGCCCCGGGTGTTCCATAGGGCAAGCGACGGAAGC