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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtgtgtctacagtgtagacttccctactcctttgcagtttgcagaccataaatactgtcaaactgatttatgactcacagttatcttgttcttagaattatctgtaatttttttcttgtttgtagGATCTGGAAATACCTGATCGAT

Basic information

species Zea mays
transcript GRMZM2G144362_T05
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86468332|gb|DY234702.1|DY234702
EST:     TCCACCTCTCCAGCCGCAGAACCACCTCACTTCGTGGAAAACGAAAGAAG                         GATCTGGAAATACCTGATCGAT
genomic: TCCACCTCTCCAGCCGCAGAACCACCTCACTTCGTGGAAAACGAAAGAAGgtttgtgtgt ... ttgtttgtagGATCTGGAAATACCTGATCGAT
EST: gi|71430540|gb|DR811590.1|DR811590
EST:     TCCACCTCTCCAGCCGCAGAACCACCTCACTTCGTGGAAAACGAAAGAAG                         GATCTGGAAATACCTGATCGAT
genomic: TCCACCTCTCCAGCCGCAGAACCACCTCACTTCGTGGAAAACGAAAGAAGgtttgtgtgt ... ttgtttgtagGATCTGGAAATACCTGATCGAT
EST: gi|211211873|gb|FL151948.1|FL151948
EST:     TCCACCTCTCCAGCCGCAGAACCACCTCACTTCGTGGAAAACGAAAGAAG                         GATCTGGAAATACCTGATCGAT
genomic: TCCACCTCTCCAGCCGCAGAACCACCTCACTTCGTGGAAAACGAAAGAAGgtttgtgtgt ... ttgtttgtagGATCTGGAAATACCTGATCGAT
EST: gi|149014215|gb|EE043769.2|EE043769
EST:     TCCACCTCTCCAGCCGCAGAACCACCTCACTTCGTGGAAAACGAAAGAAG                         GATCTGGAAATACCTGATCGAT
genomic: TCCACCTCTCCAGCCGCAGAACCACCTCACTTCGTGGAAAACGAAAGAAGgtttgtgtgt ... ttgtttgtagGATCTGGAAATACCTGATCGAT
EST: gi|93281087|gb|EB673351.1|EB673351
EST:     TCCACCTCTCCAGCCGCAGAACCACCTCACTTCGTGGAAAACGAAAGAAG                         GATCTGGAAATACCTGATCGAT
genomic: TCCACCTCTCCAGCCGCAGAACCACCTCACTTCGTGGAAAACGAAAGAAGgtttgtgtgt ... ttgtttgtagGATCTGGAAATACCTGATCGAT
EST: gi|148933495|gb|EC877204.2|EC877204
EST:     TCCACCTCTCCAGCCGCAGAACCACCTCACTTCGTGGAAAACGAAAGAAG                         GATCTGGAAATACCTGATCGAT
genomic: TCCACCTCTCCAGCCGCAGAACCACCTCACTTCGTGGAAAACGAAAGAAGgtttgtgtgt ... ttgtttgtagGATCTGGAAATACCTGATCGAT
EST: gi|78123130|gb|DV541514.1|DV541514
EST:     TCCACCTCTCCAGCCGCAGAACCACCTCACTTCGTGGAAAACGAAAGAAG                         GATCTGGAAATACCTGATCGAT
genomic: TCCACCTCTCCAGCCGCAGAACCACCTCACTTCGTGGAAAACGAAAGAAGgtttgtgtgt ... ttgtttgtagGATCTGGAAATACCTGATCGAT
EST: gi|76291843|gb|DV031411.1|DV031411
EST:     TCCACCTCTCCAGCCGCAGAACCACCTCACTTCGTGGAAAACGAAAGAAG                         GATCTGGAAATACCTGATCGAT
genomic: TCCACCTCTCCAGCCGCAGAACCACCTCACTTCGTGGAAAACGAAAGAAGgtttgtgtgt ... ttgtttgtagGATCTGGAAATACCTGATCGAT
EST: gi|93282997|gb|EB675261.1|EB675261
EST:     TCCACCTCTCCAGCCGCAGAACCACCTCACTTCGTGGAAAACGAAAGAAG                         GATCTGGAAATACCTGATCGAT
genomic: TCCACCTCTCCAGCCGCAGAACCACCTCACTTCGTGGAAAACGAAAGAAGgtttgtgtgt ... ttgtttgtagGATCTGGAAATACCTGATCGAT
EST: gi|78079634|gb|DV508046.1|DV508046
EST:     TCCACCTCTCCAGCCGCAGAACCACCTCACTTCGTGGAAAACGAAAGAAG                         GATCTGGAAATACCTGATCGAT
genomic: TCCACCTCTCCAGCCGCAGAACCACCTCACTTCGTGGAAAACGAAAGAAGgtttgtgtgt ... ttgtttgtagGATCTGGAAATACCTGATCGAT
EST: gi|13237097|gb|BG355111.1|BG355111
EST:     TCCACCTCTCCAGCCGCAGAACCACCTCACTTCGTGGAAAACGAAAGAAG                         GATCTGGAAATACCTGATCGAT
genomic: TCCACCTCTCCAGCCGCAGAACCACCTCACTTCGTGGAAAACGAAAGAAGgtttgtgtgt ... ttgtttgtagGATCTGGAAATACCTGATCGAT
EST: gi|78088518|gb|DV516911.1|DV516911
EST:     TCCACCTCTCCAGCCGCAGAACCACCTCACTTCGTGGAAAACGAAAGAAG                         GATCTGGAAATACCTGATCGAT
genomic: TCCACCTCTCCAGCCGCAGAACCACCTCACTTCGTGGAAAACGAAAGAAGgtttgtgtgt ... ttgtttgtagGATCTGGAAATACCTGATCGAT
EST: gi|211356743|gb|FL440510.1|FL440510
EST:     CCACCTCTCCAGCCGCAGAACCACNCTM-CTTCGTGGAAAACGAAAGAAG                         GATCTGGAAATACCTGATCGAT
genomic: CCACCTCTCCAGCCGCAGAACCAC-CTCACTTCGTGGAAAACGAAAGAAGgtttgtgtgt ... ttgtttgtagGATCTGGAAATACCTGATCGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgactcacagttatcttgttcttagaattatctgtaatttttttcttgtttgtagGATCTGGAAATACCTGATCGAT
 gactcac  putative branch site (score: 2)
                                     tttttttcttgtttgt  putative PPT
                     ttagaattatctgtaa  TA-rich tract