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gtaagtgaaaaagaagtgagcatttatctgatcctgtaaggcttcagtttcttgttaactttataactcttgtattttctgaatgaactgagattaaggacttatgacaatgcttgtgatcttccattgcttactccagGACCTCTGTTAGCCATATGGATTTTCCAGAAATTGTGGAGGGAGGGATCAAGCAGATGTTAGAATTACTTGGTGATGACAATGCACCATTTGAT
species | Zea mays |
transcript | GRMZM2G144362_T05 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GAGGCTACTACATGCATTGGTGTTGTAATTCGCAACAACAAGACTGGAAT GACCTCTGTTAGCCATATGGATTTTCCAGAAATTGTGGAGGGAGGGATCAAEST: gi|94474973|gb|EB703931.1|EB703931
genomic: GAGGCTACTACATGCATTGGTGTTGTAATTCGCAACAACAAGACTGGAATgtaagtgaaa ... cttactccagGACCTCTGTTAGCCATATGGATTTTCCAGAAATTGTGGAGGGAGGGATCAA
EST: GAGGCTACTACATGCATTGGTGTTGTAATTCGCAACAACAAGACTGGAAT GACCTCTGTTAGCCATATGGATTTTCCAGAAATTGTGGAGGGAGGGATCAAEST: gi|76286746|gb|DV026314.1|DV026314
genomic: GAGGCTACTACATGCATTGGTGTTGTAATTCGCAACAACAAGACTGGAATgtaagtgaaa ... cttactccagGACCTCTGTTAGCCATATGGATTTTCCAGAAATTGTGGAGGGAGGGATCAA
EST: GAGGCTACTACATGCATTGGTGTTGTAATTCGCAACAACAAGACTGGAAT GACCTCTGTTAGCCATATGGATTTTCCAGAAATTGTGGAGGGAGGGATCAAEST: gi|71441108|gb|DR822158.1|DR822158
genomic: GAGGCTACTACATGCATTGGTGTTGTAATTCGCAACAACAAGACTGGAATgtaagtgaaa ... cttactccagGACCTCTGTTAGCCATATGGATTTTCCAGAAATTGTGGAGGGAGGGATCAA
EST: GAGGTTACTACATGCATTGGTGTTGTAATTCGCAACAACAAGACTGGAAT GACCTCTGTTAGCCATATGGATTTTCCAGAAATTGTGGAGGGAGGGATCAAEST: gi|78088519|gb|DV516912.1|DV516912
genomic: GAGGCTACTACATGCATTGGTGTTGTAATTCGCAACAACAAGACTGGAATgtaagtgaaa ... cttactccagGACCTCTGTTAGCCATATGGATTTTCCAGAAATTGTGGAGGGAGGGATCAA
EST: GAGGCTACTACATGCATTGGTGTTGTAATTCGCAACAACAAGACTGGAAT GACCTCTGTTAGCCATATGGATTTTCCAGAAATTGTGGAGGGAGGGATCAAEST: gi|78079635|gb|DV508047.1|DV508047
genomic: GAGGCTACTACATGCATTGGTGTTGTAATTCGCAACAACAAGACTGGAATgtaagtgaaa ... cttactccagGACCTCTGTTAGCCATATGGATTTTCCAGAAATTGTGGAGGGAGGGATCAA
EST: GAGGCTACTACATGCATTGGTGTTGTAATTCGCAACAACAAGACTGGAAT GACCTCTGTTAGCCATATGGATTTTCCAGAAATTGTGGAGGGAGGGATCAAEST: gi|148933496|gb|EC877205.2|EC877205
genomic: GAGGCTACTACATGCATTGGTGTTGTAATTCGCAACAACAAGACTGGAATgtaagtgaaa ... cttactccagGACCTCTGTTAGCCATATGGATTTTCCAGAAATTGTGGAGGGAGGGATCAA
EST: GAGGCTACTACATGCATTGGTGTTGTAATTCGCAACAACAAGACTGGAAT GACCTCTGTTAGCCATATGGATTTTCCAGAAATTGTGGAGGGAGGGATCAAEST: gi|148981958|gb|EE028016.2|EE028016
genomic: GAGGCTACTACATGCATTGGTGTTGTAATTCGCAACAACAAGACTGGAATgtaagtgaaa ... cttactccagGACCTCTGTTAGCCATATGGATTTTCCAGAAATTGTGGAGGGAGGGATCAA
EST: GAGGCTACTACATGCATTGGTGTTGTAATTCGCAACAACAAGACTGGAAT GACCTCTGTTAGCCATATGGATTTTCCAGAAATTGTGGAGGGAGGGATCAAEST: gi|91055958|gb|EB166376.1|EB166376
genomic: GAGGCTACTACATGCATTGGTGTTGTAATTCGCAACAACAAGACTGGAATgtaagtgaaa ... cttactccagGACCTCTGTTAGCCATATGGATTTTCCAGAAATTGTGGAGGGAGGGATCAA
EST: GAGGCTACTACATGCATTGGTGTTGTAATTCGCAACAACAAGACTGGAAT GACCTCTGTTAGCCATATGGATTTTCCAGAAATTGTGGAGGGAGGGATCAAEST: gi|89249445|gb|DY621231.1|DY621231
genomic: GAGGCTACTACATGCATTGGTGTTGTAATTCGCAACAACAAGACTGGAATgtaagtgaaa ... cttactccagGACCTCTGTTAGCCATATGGATTTTCCAGAAATTGTGGAGGGAGGGATCAA
EST: GAGGCTACTACATGCATTGGTGTTGTAATTCGCAACAACAAGACTGGAAT GACCTCTGTTAGCCATATGGATTTTCCAGAAATTGTGGAGGGAGGGATCAAEST: gi|94479450|gb|EB708408.1|EB708408
genomic: GAGGCTACTACATGCATTGGTGTTGTAATTCGCAACAACAAGACTGGAATgtaagtgaaa ... cttactccagGACCTCTGTTAGCCATATGGATTTTCCAGAAATTGTGGAGGGAGGGATCAA
EST: GAGGCTACTACATGCATTGGTGTTGTAATTCGCAACAACCAGACTGGAAT GACCCTCTGTTAGCCATATGGATTTTCCAGAAATTGTGGAGGGAGGGATCAEST: gi|148985933|gb|EE029846.2|EE029846
genomic: GAGGCTACTACATGCATTGGTGTTGTAATTCGCAACAACAAGACTGGAATgtaagtgaaa ... cttactccagGACC-TCTGTTAGCCATATGGATTTTCCAGAAATTGTGGAGGGAGGGATCA
EST: GAGGCTACTACATGCATTGGTGTTGTAATTCGCAACAACCAGACTGGAAT GACCTCTGTTAGCCATATGGATTTTCCAGAAATTGTGGAGGGAGGGATCAAEST: gi|149014216|gb|EE043770.2|EE043770
genomic: GAGGCTACTACATGCATTGGTGTTGTAATTCGCAACAACAAGACTGGAATgtaagtgaaa ... cttactccagGACCTCTGTTAGCCATATGGATTTTCCAGAAATTGTGGAGGGAGGGATCAA
EST: GAGGCTACTACATGCATTGGTGTTGTAATTCGCAACAACAAGACTGGAAT GACCTCTGTTAGCCATATGGATTTTCCAGAAATTGTGGAGGGAGGGATCAAEST: gi|71430541|gb|DR811591.1|DR811591
genomic: GAGGCTACTACATGCATTGGTGTTGTAATTCGCAACAACAAGACTGGAATgtaagtgaaa ... cttactccagGACCTCTGTTAGCCATATGGATTTTCCAGAAATTGTGGAGGGAGGGATCAA
EST: GAGGCTACTACATGCATTGGTGTTGTAATTCGCAACAACAAGACTGGAAT GACCTCTGTTAGCCATATGGATTTTCCAGAAATTGTGGAGGGAGGGATCAAEST: gi|93282998|gb|EB675262.1|EB675262
genomic: GAGGCTACTACATGCATTGGTGTTGTAATTCGCAACAACAAGACTGGAATgtaagtgaaa ... cttactccagGACCTCTGTTAGCCATATGGATTTTCCAGAAATTGTGGAGGGAGGGATCAA
EST: GAGGCTACTACATGCATTGGTGTTGTAATTCGCAACAACAAGACTGGAAT GACCTCTGTTAGCCATATGGATTTTCCAGAAATTGTGGAGGGAGGGATCAAEST: gi|76937601|gb|DV175194.1|DV175194
genomic: GAGGCTACTACATGCATTGGTGTTGTAATTCGCAACAACAAGACTGGAATgtaagtgaaa ... cttactccagGACCTCTGTTAGCCATATGGATTTTCCAGAAATTGTGGAGGGAGGGATCAA
EST: GAGGCTACTACATGCATTGGTGTTGTAATTCGCAACAACAAGACTGGAAT GACCTCTGTTAGCCATATGGATTTTCCAGAAATTGTGGAGGGAGGGATCAAEST: gi|93281830|gb|EB674094.1|EB674094
genomic: GAGGCTACTACATGCATTGGTGTTGTAATTCGCAACAACAAGACTGGAATgtaagtgaaa ... cttactccagGACCTCTGTTAGCCATATGGATTTTCCAGAAATTGTGGAGGGAGGGATCAA
EST: GAGGCTACTACATGCATTGGTGTTGTAATTCGCAACAACAAGACTGGAAT GACCTCTGTTAGCCATATGGATTTTCCAGAAATTGTGGAGGGAGGGATCAAEST: gi|71332805|gb|DR803405.1|DR803405
genomic: GAGGCTACTACATGCATTGGTGTTGTAATTCGCAACAACAAGACTGGAATgtaagtgaaa ... cttactccagGACCTCTGTTAGCCATATGGATTTTCCAGAAATTGTGGAGGGAGGGATCAA
EST: GAGGCTACTACATGCATTGGTGTTGTAATTCGCAACAACAAGACTGGAAT GACCTCTGTTAGCCATATGGATTTTCCAGAAATTGTGGAGGGAGGGATCAAEST: gi|50333623|gb|CO528749.1|CO528749
genomic: GAGGCTACTACATGCATTGGTGTTGTAATTCGCAACAACAAGACTGGAATgtaagtgaaa ... cttactccagGACCTCTGTTAGCCATATGGATTTTCCAGAAATTGTGGAGGGAGGGATCAA
EST: GAGGCTACTACATGCATTGGTGTTGTAATTCGCAACAACAAGACTGGAAT GACCTCTGTTAGCCATATGGATTTTCCAGAAATTGTGGAGGGAGGGATCAAEST: gi|78123131|gb|DV541515.1|DV541515
genomic: GAGGCTACTACATGCATTGGTGTTGTAATTCGCAACAACAAGACTGGAATgtaagtgaaa ... cttactccagGACCTCTGTTAGCCATATGGATTTTCCAGAAATTGTGGAGGGAGGGATCAA
EST: GAGGCTACTACGTGCATTGGTGTTGTAATTCGCAACAACAAGACTGGAAT GACCTCTGTTAGCCATATGGATTTTCCAGAAATTGTGGAGGGAGGGATCAAEST: gi|94477309|gb|EB706267.1|EB706267
genomic: GAGGCTACTACATGCATTGGTGTTGTAATTCGCAACAACAAGACTGGAATgtaagtgaaa ... cttactccagGACCTCTGTTAGCCATATGGATTTTCCAGAAATTGTGGAGGGAGGGATCAA
EST: GAGGCTACTACATGCATTGGTGTTGTAATTCGCAACAACAAGACTGGAAT GACCTCTGTTAGCCATATGGATTTTCCAGAAATTGTGGAGGGAGGGATCAAEST: gi|76010683|gb|DT937853.1|DT937853
genomic: GAGGCTACTACATGCATTGGTGTTGTAATTCGCAACAACAAGACTGGAATgtaagtgaaa ... cttactccagGACCTCTGTTAGCCATATGGATTTTCCAGAAATTGTGGAGGGAGGGATCAA
EST: GAGGCTACTACATGCATTGGTGTTGTAATTCGCAACAACAAGACTGGAAT GACCTCTGTTAGCCATATGGATTTTCCAGAAATTGTGGAGGGAGGGATCAAEST: gi|71449941|gb|DR830991.1|DR830991
genomic: GAGGCTACTACATGCATTGGTGTTGTAATTCGCAACAACAAGACTGGAATgtaagtgaaa ... cttactccagGACCTCTGTTAGCCATATGGATTTTCCAGAAATTGTGGAGGGAGGGATCAA
EST: GAGGCTACTACATGCATTGGTGTTGTAATTCGCAACAACAAGACTGGAAT GACCTCTGTTAGCCATATGGATTTTCCAGAAATTGTGGAGGGAGGGATCAA
genomic: GAGGCTACTACATGCATTGGTGTTGTAATTCGCAACAACAAGACTGGAATgtaagtgaaa ... cttactccagGACCTCTGTTAGCCATATGGATTTTCCAGAAATTGTGGAGGGAGGGATCAA
gaactgagattaaggacttatgacaatgcttgtgatcttccattgcttactccagGACCTCTGTTAGCCATATGGATTTTCCAGAAATTGTGGAGGGAGGGATCAAGCAGATGTTAGAATTACTTGGTGATGACAATGCACCATTTGAT
tgcttac putative branch site (score: 2)
cttactcc CT-rich tract
agattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtgaaaaagaagtgagcatttatctgatcctgtaaggcttcagtttcttgttaactttataactcttgtattttctgaatgaactgagattaaggacttatgacaatgcttgtgatcttccattgcttactccagGACCTCTGTTAGCCATATGGATTTTCCAGAAATTGTGGAGGGAGGGATCAAGCAGATGTTAGAATTACTTGGTGATGACAATGCACCATTTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG