1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TCCAGGAGATTTTGTCCATGTTATAGGGGATGCTCATGTCTATAGAAATCACGTTCGAGCTCTGGAGGAACAGATTCAGAAGATGCCTAAACCATTTCCAgtgagccaaccatttttacgaaaaatatgaaatctgcatatatgaacttgatgctttgatgtttttttttgtgtgtgtgtgtgtgtgtgtgtttactttctgtgcccatgcatcttctaagttgtatgtgggtcttatgtgcag
species | Zea mays |
transcript | GRMZM2G139880_T01 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: ACGTTCGAGCTCTGGAGGAACAGATTCAGAAGATGCCTAAACCATTTCCA ATTTTGAAGATAAATCCTTCGAAAAAGGATATAGATTCTTTCATGGCGTCAEST: gi|211061450|gb|FL335153.1|FL335153
genomic: ACGTTCGAGCTCTGGAGGAACAGATTCAGAAGATGCCTAAACCATTTCCAgtgagccaac ... ttatgtgcagATTTTGAAGATAAATCCTTCGAAAAAGGATATAGATTCTTTCATGGCGTCA
EST: ACGTTCGAGCTCTGGAGGAACAGATTCAGAAGATGCCTAAACCATTTCCA ATTTTAAAGATAAATCCTTCGAAAAAGGATATAGATTCTTTCATGGCGTCAEST: gi|60397930|gb|DN230746.1|DN230746
genomic: ACGTTCGAGCTCTGGAGGAACAGATTCAGAAGATGCCTAAACCATTTCCAgtgagccaac ... ttatgtgcagATTTTGAAGATAAATCCTTCGAAAAAGGATATAGATTCTTTCATGGCGTCA
EST: ACGTTCGAGCTCTGGAGGAACAGATTCAGAAGATGCCTAAACCATTTCCA ATTTTGAAGATAAATCCTTCGAAAAAGGATATAGATTCTTTCATGGCGTCAEST: gi|78022008|gb|DV490395.1|DV490395
genomic: ACGTTCGAGCTCTGGAGGAACAGATTCAGAAGATGCCTAAACCATTTCCAgtgagccaac ... ttatgtgcagATTTTGAAGATAAATCCTTCGAAAAAGGATATAGATTCTTTCATGGCGTCA
EST: ACGTTCGAGCTCTGGAGGAACAGATTCAGAAGATGCCTAAACCATTTCCA ATTTTGAAGATAAATCCTTCGAAAAAGGATATAGATTCTTTCATGGCGTCAEST: gi|60341313|gb|DN208286.1|DN208286
genomic: ACGTTCGAGCTCTGGAGGAACAGATTCAGAAGATGCCTAAACCATTTCCAgtgagccaac ... ttatgtgcagATTTTGAAGATAAATCCTTCGAAAAAGGATATAGATTCTTTCATGGCGTCA
EST: ACGTTCGAGCTCTGGAGGAACAGATTCAGAAGATGCCTAAACCATTTCCA ATTTTGAAGATAAATCCTTCGAAAAAGGATATAGATTCTTTCATGGCGTCAEST: gi|6827015|gb|AW330658.1|AW330658
genomic: ACGTTCGAGCTCTGGAGGAACAGATTCAGAAGATGCCTAAACCATTTCCAgtgagccaac ... ttatgtgcagATTTTGAAGATAAATCCTTCGAAAAAGGATATAGATTCTTTCATGGCGTCA
EST: ACGTTCGAGCTCTGGAGGAACAGATTCAGAAGATGCCTAAACCATTTCCA ATTTTGAAGATAAATCCTTCGAAAAAGGATATAGATTCTTTCTTGGCGTCAEST: gi|148983313|gb|EE029285.2|EE029285
genomic: ACGTTCGAGCTCTGGAGGAACAGATTCAGAAGATGCCTAAACCATTTCCAgtgagccaac ... ttatgtgcagATTTTGAAGATAAATCCTTCGAAAAAGGATATAGATTCTTTCATGGCGTCA
EST: ACGTTCGAGCTCTGGAGGAACAGATTCAGAAGATGCCTAAACCATTTCCA ATTTTGAAGATAAATCCTTCGAAAAAGGATATAGATTCTTTCATGGCGTCA
genomic: ACGTTCGAGCTCTGGAGGAACAGATTCAGAAGATGCCTAAACCATTTCCAgtgagccaac ... ttatgtgcagATTTTGAAGATAAATCCTTCGAAAAAGGATATAGATTCTTTCATGGCGTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCAGGAGATTTTGTCCATGTTATAGGGGATGCTCATGTCTATAGAAATCACGTTCGAGCTCTGGAGGAACAGATTCAGAAGATGCCTAAACCATTTCCAgtgagccaaccatttttacgaaaaatatgaaatctgcatatatgaacttgatgctttgatgtttttttttgtgtgtgtgtgtgtgtgtgtgtttactttctgtgcccatgcatcttctaagttgtatgtgggtcttatgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG