1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
ATCCTTCGAAAAAGGATATAGATTCTTTCATGGCGTCAGACTTCAAGCTGGTTGGCTATGATCCTCACCAGAAGCTAGAGATGAAAATGGCAGTGTAACGgtaatatacattctatgatttctcctggtggactgtcattaacttcggccactacaagtttacttgctcgctggcacaaaacagagctctagtgctggct...
species | Zea mays |
transcript | GRMZM2G139880_T01 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: GTTGGCTATGATCCTCACCAGAAGCTAGAGATGAAAATGGCAGTGTAACG GTGGCTTAGCTCTGGAGCCCCCAGCCTTGGAACCTCGGTGGGTGAAATCAGEST: gi|60397930|gb|DN230746.1|DN230746
genomic: GTTGGCTATGATCCTCACCAGAAGCTAGAGATGAAAATGGCAGTGTAACGgtaatataca ... atttttgcagGTGGCTTAGCTCTGGAGCCCCCAGCCTTGGAACCTCGGTGGGTGAAATCAG
EST: GTTGGCTATGATCCTCACCAGAAGCTAGAGATGAAAATGGCAGTGTAACG GTGGCTTAGCTCTGGAGCCCCCAGCCTTGGAACCTCGGTGGGTGAAATCAGEST: gi|78022008|gb|DV490395.1|DV490395
genomic: GTTGGCTATGATCCTCACCAGAAGCTAGAGATGAAAATGGCAGTGTAACGgtaatataca ... atttttgcagGTGGCTTAGCTCTGGAGCCCCCAGCCTTGGAACCTCGGTGGGTGAAATCAG
EST: GTTGGCTATGATCCTCACCAGAAGCTAGAGATGAAAATGGCAGTGTAACG GTGGCTTAGCTCTGGAGCCCCCAGCCTTGGAACCTCGGTGGGTGAAATCAGEST: gi|60341313|gb|DN208286.1|DN208286
genomic: GTTGGCTATGATCCTCACCAGAAGCTAGAGATGAAAATGGCAGTGTAACGgtaatataca ... atttttgcagGTGGCTTAGCTCTGGAGCCCCCAGCCTTGGAACCTCGGTGGGTGAAATCAG
EST: GTTGGCTATGATCCTCACCAGAAGCTAGAGATGAAAATGGCAGTGTAACG GTGGCTTAGCTCTGGAGCCCCCAGCCTTGGAACCTCGGTGGGTGAAATCAGEST: gi|6827015|gb|AW330658.1|AW330658
genomic: GTTGGCTATGATCCTCACCAGAAGCTAGAGATGAAAATGGCAGTGTAACGgtaatataca ... atttttgcagGTGGCTTAGCTCTGGAGCCCCCAGCCTTGGAACCTCGGTGGGTGAAATCAG
EST: GTTGGCTATGATCCTCACCAGAAGCTAGAGATGAAAATGGCAGTGTAACG GTGGCTTAGCTCTGGAGCCCCCAGCCTTGGAACCTCGGTGGGTGAAATCAGEST: gi|148983313|gb|EE029285.2|EE029285
genomic: GTTGGCTATGATCCTCACCAGAAGCTAGAGATGAAAATGGCAGTGTAACGgtaatataca ... atttttgcagGTGGCTTAGCTCTGGAGCCCCCAGCCTTGGAACCTCGGTGGGTGAAATCAG
EST: GTTGGCTATGATCCTCACCAGAAGCTAGAGATGAAAATGGCAGTGTAACG GTGGCTTAGTTCTGGAGCCCCCAGCCTTGGAACCTCGGTGGGTGAAATCAGEST: gi|18166679|gb|BM336518.1|BM336518
genomic: GTTGGCTATGATCCTCACCAGAAGCTAGAGATGAAAATGGCAGTGTAACGgtaatataca ... atttttgcagGTGGCTTAGCTCTGGAGCCCCCAGCCTTGGAACCTCGGTGGGTGAAATCAG
EST: GTTGGCTATGATCCTCACCAGAAGCTAGAGATGAAAATGGCAGTGTAACG GTGGCTTAGCTCTGGAGCCCCCAGCCTTGGAACCTCGGTGGGTGAAATCAG
genomic: GTTGGCTATGATCCTCACCAGAAGCTAGAGATGAAAATGGCAGTGTAACGgtaatataca ... atttttgcagGTGGCTTAGCTCTGGAGCCCCCAGCCTTGGAACCTCGGTGGGTGAAATCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCCTTCGAAAAAGGATATAGATTCTTTCATGGCGTCAGACTTCAAGCTGGTTGGCTATGATCCTCACCAGAAGCTAGAGATGAAAATGGCAGTGTAACGgtaatatacattctatgatttctcctggtggactgtcattaacttcggccactacaagtttacttgctcgctggcacaaaacagagctctagtgctggct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acaaaaca