1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GTTTTGCAAGAAAAGGGTATTCATATCTGGGATGGCAATGCTTCAAGAGAGTATCTTGACCGgtatttatcagttggatataagctgtaaataaattatttctctgttattgatatctaatccacctggtcatcttttctag
species | Zea mays |
transcript | GRMZM2G139880_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AAGGGTATTCATATCTGGGATGGCAATGCTTCAAGAGAGTATCTTGATCG TATTGGCTTGGCACACAGGGAGGAAGGTGATCTAGGTCCAGTTTATGGATTEST: gi|32838087|gb|CD977765.1|CD977765
genomic: AAGGGTATTCATATCTGGGATGGCAATGCTTCAAGAGAGTATCTTGACCGgtatttatca ... tcttttctagTATTGGCTTGGCACACAGGGAGGAAGGTGATCTAGGTCCAGTTTATGGATT
EST: AAGGGTATTCATATCTGGGATGGCAATGCTTCAAGAGAGTATCTTGACCG TATTGACTTGGCACACAGGGAGGAAGGTGATCTAGGTCCAGTTTATGGATTEST: gi|67012996|gb|CO441745.1|CO441745
genomic: AAGGGTATTCATATCTGGGATGGCAATGCTTCAAGAGAGTATCTTGACCGgtatttatca ... tcttttctagTATTGGCTTGGCACACAGGGAGGAAGGTGATCTAGGTCCAGTTTATGGATT
EST: AAGGGTATTCATATCTGGGATGGCAATGCTTCAAGAGAGTATCTTGACCG TATTGGCTTGGCACACAGGGAGGAAGGTGATCTAGGTCCAGTTTATGGATTEST: gi|32930437|gb|CF035249.1|CF035249
genomic: AAGGGTATTCATATCTGGGATGGCAATGCTTCAAGAGAGTATCTTGACCGgtatttatca ... tcttttctagTATTGGCTTGGCACACAGGGAGGAAGGTGATCTAGGTCCAGTTTATGGATT
EST: AAGGGTATTCATATCTGGGATGGCAATGCTTCAAGAGAGTATCTTGACCG TATTGGCTTGGCACACAGGGAGGAAGGTGATCTAGGTCCAGTTTATGGATT
genomic: AAGGGTATTCATATCTGGGATGGCAATGCTTCAAGAGAGTATCTTGACCGgtatttatca ... tcttttctagTATTGGCTTGGCACACAGGGAGGAAGGTGATCTAGGTCCAGTTTATGGATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTTTGCAAGAAAAGGGTATTCATATCTGGGATGGCAATGCTTCAAGAGAGTATCTTGACCGgtatttatcagttggatataagctgtaaataaattatttctctgttattgatatctaatccacctggtcatcttttctag
- - - - - - - - - - - - - - - - - - - - - - AAGAGA