1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...gttgtccctttctatcttttgatgtttcttgtatccaactaataaaagctagtagtctttttttttccaactctaaccctttgtgtcttaatgttgcaagATCTTTCTCCAGGAGATTTTGTCCATGTTATAGGGGATGCTCATGTCTATAGAAATCACGTTCGAGCTCTGGAGGAACAGATTCAGAAGATGCCTAAACC
species | Zea mays |
transcript | GRMZM2G139880_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CAACATCGCATCATATTCTCTTTTGACGTACATGATTGCTCAAGTTTGTG ATCTTTCTCCAGGAGATTTCGTCCATGTTATAGGGGATGCTCATGTCTATAEST: gi|166594739|gb|EG233750.1|EG233750
genomic: CAACATCGCATCATATTCTCTTTTGACATATATGATTGCTCAAGTTTGTGgtaggttctt ... atgttgcaagATCTTTCTCCAGGAGATTTTGTCCATGTTATAGGGGATGCTCATGTCTATA
EST: ATTGCTCAAGTTTGTG ATCTTTCTCCAGGAGATTTTGTCCATGTTATAGGGGATGCTCATGTCTATAEST: gi|211061450|gb|FL335153.1|FL335153
genomic: ATTGCTCAAGTTTGTGgtaggttctt ... atgttgcaagATCTTTCTCCAGGAGATTTTGTCCATGTTATAGGGGATGCTCATGTCTATA
EST: CAACATCGCATCATATTCTCTTTTGACGTACATGATTGCTCAAGTTTGTG ATCTTTCTCCAGGAGATTTTGTCCATGTTATAGGGGATGCTCATGTCTATAEST: gi|60397930|gb|DN230746.1|DN230746
genomic: CAACATCGCATCATATTCTCTTTTGACATATATGATTGCTCAAGTTTGTGgtaggttctt ... atgttgcaagATCTTTCTCCAGGAGATTTTGTCCATGTTATAGGGGATGCTCATGTCTATA
EST: CAACATCGCATCATATTCTCTTTTGACATATATGATTGCTCAAGTTTGTG ATCTTTCTCCAGGAGATTTTGTCCATGTTATAGGGGATGCTCATGTCTATAEST: gi|60341313|gb|DN208286.1|DN208286
genomic: CAACATCGCATCATATTCTCTTTTGACATATATGATTGCTCAAGTTTGTGgtaggttctt ... atgttgcaagATCTTTCTCCAGGAGATTTTGTCCATGTTATAGGGGATGCTCATGTCTATA
EST: CAACATCGCATCATATTCTCTTTTGACATATATGATTGCTCAAGTTTGTG ATCTTTCTCCAGGAGATTTTGTCCATGTTATAGGGGATGCTCATGTCTATAEST: gi|6827015|gb|AW330658.1|AW330658
genomic: CAACATCGCATCATATTCTCTTTTGACATATATGATTGCTCAAGTTTGTGgtaggttctt ... atgttgcaagATCTTTCTCCAGGAGATTTTGTCCATGTTATAGGGGATGCTCATGTCTATA
EST: CAACATCGCATCATATTCTCTTTTGACGTACATGATTGCTCAAGTTTGTG ATCTTTCTCCAGGAGATTTTGTCCATGTTATAGGGGATGCTCATGTCTATAEST: gi|148983313|gb|EE029285.2|EE029285
genomic: CAACATCGCATCATATTCTCTTTTGACATATATGATTGCTCAAGTTTGTGgtaggttctt ... atgttgcaagATCTTTCTCCAGGAGATTTTGTCCATGTTATAGGGGATGCTCATGTCTATA
EST: CAACATCGCATCATATTCTCTTTTGACATATATGATTGCTCAAGTTTGTG ATCTTTCTCCAGGAGATTTTGTCCATGTTATAGGGGATGCTCATGTCTATA
genomic: CAACATCGCATCATATTCTCTTTTGACATATATGATTGCTCAAGTTTGTGgtaggttctt ... atgttgcaagATCTTTCTCCAGGAGATTTTGTCCATGTTATAGGGGATGCTCATGTCTATA
aagctagtagtctttttttttccaactctaaccctttgtgtcttaatgttgcaagATCTTTCTCCAGGAGATTTTGTCCATGTTATAGGGGATGCTCATGTCTATAGAAATCACGTTCGAGCTCTGGAGGAACAGATTCAGAAGATGCCTAAACC
tagtcttttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgtccctttctatcttttgatgtttcttgtatccaactaataaaagctagtagtctttttttttccaactctaaccctttgtgtcttaatgttgcaagATCTTTCTCCAGGAGATTTTGTCCATGTTATAGGGGATGCTCATGTCTATAGAAATCACGTTCGAGCTCTGGAGGAACAGATTCAGAAGATGCCTAAACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - -tgatgtt
- - - - - - - - - - - - - - -tgtatcc
- - - - - - - - - - - - - - - - - - - - aataaaa