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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagggtgtaattgcaccttctctatgtgtcttttttgctgttgtatttagaagttatatctagaagttattcacagGAGCCTGGAAAACCGTCTCTTCACTGTCGAATTTATCAGCCTGATCAGCCAAAATTTGGGTATGTAACAAATGTATGTGTTGCTAAATATGCAAGGCGTC

Basic information

species Zea mays
transcript GRMZM2G136389_T03
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G136389_T03 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os03g07990.1 (Oryza sativa), 3'ss of exon 6
----------gtag-ggtgtaat-tgcaccttctctatgtgtcttttt---tgctgttgtatttagaagttatatctagaagttattcacagGAGCCTGGAAAACCGTCTCTTCACTGTCGAATTTATCAGCCTGATCAGCCAAAATTTGGGTATGTAACAAATGTATGTGTTGCTAAATATGCAAGGCGTC
           |||  || ||     ||  || | ||| |  ||| |    |  | || |  |   || ||| ||||  ||||| ||| ||||||||||||||  | ||  |||| ||| |||| || ||||| ||||||||||| ||||||||| | |||||||| |||||||||||||||||| ||||||
gtatggaaaaatagcagtatagcacccatgttttttatataacttctacaatttttttatggtggaaaattacatctcaaagttcttcccagGAGCCTGGAAAGTCATCATTTCATTGTAGAATATACCAGCCAGATCAGCCAAAGTTTGGGTATCTGACAAATGTTTGTGTTGCTAAATATGCACGGCGTC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71431215|gb|DR812265.1|DR812265
EST:     CCTTAGATGTATGTGTAAGGCATCCTCTATATGGGGAGAAATTTCCTGAG                         GAGCCTGAAAAAC-GTCTCTTCACTGTCGAA
genomic: CCTTAGATGTATGTGTAAGGCATCCTCTATATGGGGAGAAATTTCCTGAGgtagggtgta ... ttattcacagGAGCCTGGAAAACCGTCTCTTCACTGTCGAA
EST: gi|91876453|gb|EB406410.1|EB406410
EST:     CCTTAGATGTATGTGTAAGGCATCCTCTATATGGGGAGAA-TTTCCTGAG                         GAGCCTGAAAAACCGTC
genomic: CCTTAGATGTATGTGTAAGGCATCCTCTATATGGGGAGAAATTTCCTGAGgtagggtgta ... ttattcacagGAGCCTGGAAAACCGTC
EST: gi|71759138|gb|DR957075.1|DR957075
EST:     CCTTAGATGTATGTGTAAGGCATCCTCTATATGGGGAGAAATTTCCTGAG                         GAGCCTGGAAAACCGTCTCTTCACTGTCGAATTTATCAGCCTGATCAGCCA
genomic: CCTTAGATGTATGTGTAAGGCATCCTCTATATGGGGAGAAATTTCCTGAGgtagggtgta ... ttattcacagGAGCCTGGAAAACCGTCTCTTCACTGTCGAATTTATCAGCCTGATCAGCCA
EST: gi|94472235|gb|EB701193.1|EB701193
EST:     CTTAGATGTATGTGTAAGGCATCCTCTATATGGGGAGAAAATTCCTTGAG                         GAGCCTGGAAAACCGTCTCTTCACTGTCGAAATTTATCAGCCTGATCAGC
genomic: CTTAGATGTATGTGTAAGGCATCCTCTATATGGGGAGAAATTTCCT-GAGgtagggtgta ... ttattcacagGAGCCTGGAAAACCGTCTCTTCACTGTCGAA-TTTATCAGCCTGATCAGC
EST: gi|87153075|gb|DY397864.1|DY397864
EST:     CCTTAGATGTATGTGTAAGGCATCCTCTATATGGGGAGAAATTTCCTGAG                         GAGCCTGGAAAACCGTCTCTTCACTGTCGAATTTATCAGCCTGATCAGCCA
genomic: CCTTAGATGTATGTGTAAGGCATCCTCTATATGGGGAGAAATTTCCTGAGgtagggtgta ... ttattcacagGAGCCTGGAAAACCGTCTCTTCACTGTCGAATTTATCAGCCTGATCAGCCA
EST: gi|71429124|gb|DR810174.1|DR810174
EST:     CCTTAGATGTATGTGTAAGGCATCCTCTATATGGGGAGAAATTTCCTGAG                         GAGCCCTGGAAA-CCGTCTCTTCACTGTCGAATTTATCAGCCTGATCAGCC
genomic: CCTTAGATGTATGTGTAAGGCATCCTCTATATGGGGAGAAATTTCCTGAGgtagggtgta ... ttattcacagGAGCC-TGGAAAACCGTCTCTTCACTGTCGAATTTATCAGCCTGATCAGCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctatgtgtcttttttgctgttgtatttagaagttatatctagaagttattcacagGAGCCTGGAAAACCGTCTCTTCACTGTCGAATTTATCAGCCTGATCAGCCAAAATTTGGGTATGTAACAAATGTATGTGTTGCTAAATATGCAAGGCGTC
                      tatttagaagttatat  TA-rich tract