1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gggagtatctcactttacattctgttaaagctgcctttactgatattttcttcatctttttcccgctgaaaattttggtgtcttatgcttaatattgcagGTAAAGAACGATGACATCAGGCGAACTGTCCTGAATAGTGTTGTTGGTACCTTAGATGTATGTGTAAGGCATCCTCTATATGGGGAGAAATTTCCTGAG
species | Zea mays |
transcript | GRMZM2G136389_T03 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGAAGAGATGCAACACACAACATAGAGAGAAGTATATCTGTCTTGTCGCG GTAAAGAACGATGACATCAGGCGAACTGTCCTGAATAGTGTTGTTGGTACCEST: gi|78114509|gb|DV532898.1|DV532898
genomic: AGAAGAGATGCAACACACAACATAGAGAGAAGTATATCTGTCTTGTCGCGgtatgagata ... aatattgcagGTAAAGAACGATGACATCAGGCGAACTGTCCTGAATAGTGTTGTTGGTACC
EST: AGAAGAGATGCAACACACAACATAGAGAGAAGTATATCTGTCTTGTCGCG GTAAAGAACGATGACATCAGGCGAACTGTCCTGAATAGTGTTGTTGGTACCEST: gi|89758710|gb|DY687791.1|DY687791
genomic: AGAAGAGATGCAACACACAACATAGAGAGAAGTATATCTGTCTTGTCGCGgtatgagata ... aatattgcagGTAAAGAACGATGACATCAGGCGAACTGTCCTGAATAGTGTTGTTGGTACC
EST: AGAAGAGATGCAACACACAACATAGAGAGAAGTATATCTGTCTTGTCGCG GTAAAGAACGATGACATCAGGCGAACTGTCCTGAATAGTGTTGTTGGTACCEST: gi|18963822|gb|BM660649.1|BM660649
genomic: AGAAGAGATGCAACACACAACATAGAGAGAAGTATATCTGTCTTGTCGCGgtatgagata ... aatattgcagGTAAAGAACGATGACATCAGGCGAACTGTCCTGAATAGTGTTGTTGGTACC
EST: AGAAGAGATGCAACACACAACATAGAGAGAAGTATATCTGTCTTGTCGCG GTAAAGAACGATGACATCAGGCGAACTGTCCTGAATAGEST: gi|71431215|gb|DR812265.1|DR812265
genomic: AGAAGAGATGCAACACACAACATAGAGAGAAGTATATCTGTCTTGTCGCGgtatgagata ... aatattgcagGTAAAGAACGATGACATCAGGCGAACTGTCCTGAATAG
EST: AGAAGAGATGCAACACACAACATAGAGAGAAGTATATCTGTCTTGTCGCG GTAAAGAACGATGACATCAGGCGAACTGTCCTGAATAGTGGTGTTGGTACCEST: gi|101382964|gb|EB813535.1|EB813535
genomic: AGAAGAGATGCAACACACAACATAGAGAGAAGTATATCTGTCTTGTCGCGgtatgagata ... aatattgcagGTAAAGAACGATGACATCAGGCGAACTGTCCTGAATAGTGTTGTTGGTACC
EST: AGAAGAGATGCAACACACAACATAGAGAGAAGTATATCTGTCTTGTCGCG GTAAAGAACGATGACATCAGGCGAACTGTCCTGAATAGTGTTGTTGGTACCEST: gi|91876453|gb|EB406410.1|EB406410
genomic: AGAAGAGATGCAACACACAACATAGAGAGAAGTATATCTGTCTTGTCGCGgtatgagata ... aatattgcagGTAAAGAACGATGACATCAGGCGAACTGTCCTGAATAGTGTTGTTGGTACC
EST: AGAAGAGATGCAACACACAACATAGAGAGAAGTATATCTGTCTTGTCGCG GTAAAGAACGATGACATCAGGCGAACTGTCCTGAATAGTGGTGTTGGTACCEST: gi|94472235|gb|EB701193.1|EB701193
genomic: AGAAGAGATGCAACACACAACATAGAGAGAAGTATATCTGTCTTGTCGCGgtatgagata ... aatattgcagGTAAAGAACGATGACATCAGGCGAACTGTCCTGAATAGTGTTGTTGGTACC
EST: AGAAGAGATGCAACACACAACATAGAGAGAAGTATATCTGTCTTGTCGCG GTAAAGAACGATGACATCAGGCGAACTGTCCTGAATAGTGTTGTTGGTACCEST: gi|87153075|gb|DY397864.1|DY397864
genomic: AGAAGAGATGCAACACACAACATAGAGAGAAGTATATCTGTCTTGTCGCGgtatgagata ... aatattgcagGTAAAGAACGATGACATCAGGCGAACTGTCCTGAATAGTGTTGTTGGTACC
EST: AGAAGAGATGCAACACACAACATAGAGAGAAGTATATCTGTCTTGTCGCG GTAAAGAACGAGGACATCAGGCGAACTGTCCTGAATAGTGTTGTTGGTACCEST: gi|71429124|gb|DR810174.1|DR810174
genomic: AGAAGAGATGCAACACACAACATAGAGAGAAGTATATCTGTCTTGTCGCGgtatgagata ... aatattgcagGTAAAGAACGATGACATCAGGCGAACTGTCCTGAATAGTGTTGTTGGTACC
EST: AGAAGAGATGCAACACACAACATAGAGAGAAGTATATCTGTCTTGTCGCG GTAAAGAACGATGACATCAGGCGAACTGTCCTGAATAGTGTTGTTGGTACCEST: gi|149009815|gb|EE041700.2|EE041700
genomic: AGAAGAGATGCAACACACAACATAGAGAGAAGTATATCTGTCTTGTCGCGgtatgagata ... aatattgcagGTAAAGAACGATGACATCAGGCGAACTGTCCTGAATAGTGTTGTTGGTACC
EST: AGAAGAGATGCAACACACAACATAGAGAGAAGTATATCTGTCTTGTCGCG GTAAAGAACGATGACATCAGGCGAACTGTCCTGGATAGTGTTGTTGGTACC
genomic: AGAAGAGATGCAACACACAACATAGAGAGAAGTATATCTGTCTTGTCGCGgtatgagata ... aatattgcagGTAAAGAACGATGACATCAGGCGAACTGTCCTGAATAGTGTTGTTGGTACC
ttttcttcatctttttcccgctgaaaattttggtgtcttatgcttaatattgcagGTAAAGAACGATGACATCAGGCGAACTGTCCTGAATAGTGTTGTTGGTACCTTAGATGTATGTGTAAGGCATCCTCTATATGGGGAGAAATTTCCTGAG
gcttaat putative branch site (score: 97)
ttatgcttaatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gggagtatctcactttacattctgttaaagctgcctttactgatattttcttcatctttttcccgctgaaaattttggtgtcttatgcttaatattgcagGTAAAGAACGATGACATCAGGCGAACTGTCCTGAATAGTGTTGTTGGTACCTTAGATGTATGTGTAAGGCATCCTCTATATGGGGAGAAATTTCCTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - -cattctg
- - - - - - - - - - - - - - agctgcc
- - - - - - - - - - - - - - - - - -tttactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttttggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tatgctt