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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATGGCCACCGGCGCCGTTACGCCGCCGCCGCTGGCTGGCGCGCGGCGATTCCCCCGTGGACGAAGCTTCCTCCACCGGCGCCTCGCTACCTCGCCTATgtgagcactttatttgttgtgttttggttaattcgctattacacatccgattttctgttgttggaggaactctcgtggtagtttttatttgctaataata...

Basic information

species Zea mays
transcript GRMZM2G136389_T03
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G136389_T03 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os03g07990.1 (Oryza sativa), 5'ss of exon 1
GCATGGCCACCGGCGCCGTTACGCCGCCGCCGCTGGCTGGCGCGCGGCGATTCCCCCGTGGACGAAGCTTCCTCCACCGGCGCCTCGCTACCTCGCCTATgtgagcactttatttgttgtgttttggttaattcgctattaca--catccgattttctgttgttggaggaactctcgtggtagtttttatttgctaataata
  |  | | ||| ||  |   |||||||| ||||||| |||| | |||||   | |||| | ||  |  ||||||||||||| |||||  |||||||||||||||| || |  ||    | |||||  |  ||     |      | || | |  | ||        |   | |  ||  ||||| ||       |||    
CGACCGGCTCCGTCGTGGCGCCGCCGCCGTCGCTGGCCGGCGGGGGGCGAGGGCTCCGTCGGCGGGGAGTCCTCCACCGGCGTCTCGCGGCCTCGCCTATgtgagcgctctggttcgatttttttgccttgttttgcgtcgggttcgtctggtgctatgcccccccggt--cccgggtcctagttctttacaaagaattgcg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211505073|gb|FK974741.1|FK974741
EST:     TTCCCCCGTGGACGAAGCTTCCTCCACCGGCGCCTCGCTACCTCGCCTAT                         GAAAGATGAATCTGTGATTTCCACAGATGGTGGAAATGAGGAGACAGACAC
genomic: TTCCCCCGTGGACGAAGCTTCCTCCACCGGCGCCTCGCTACCTCGCCTATgtgagcactt ... tctctcccagGAAAGATGAATCTGTGATTTCCACAGATGGTGGAAATGAGGAGACAGACAC
EST: gi|89247752|gb|DY619538.1|DY619538
EST:     TTCCCCCGTGGACGAAGCTTCCTCCACCGGCGCCTCGCTACCTCGCCTAT                         GAAAGATGAATCTGTGATTTCCACAGATGGTGGAAATGAGGAGACAGACAC
genomic: TTCCCCCGTGGACGAAGCTTCCTCCACCGGCGCCTCGCTACCTCGCCTATgtgagcactt ... tctctcccagGAAAGATGAATCTGTGATTTCCACAGATGGTGGAAATGAGGAGACAGACAC
EST: gi|78114509|gb|DV532898.1|DV532898
EST:     TTCCCCCGTGGACGAAGCTTCCTCCACCGGCGCCTCGCTACCTCGCCTAT                         GAAAGATGAATCTGTGATTTCCACAGATGGTGGAAATGAGGAGACAGACAC
genomic: TTCCCCCGTGGACGAAGCTTCCTCCACCGGCGCCTCGCTACCTCGCCTATgtgagcactt ... tctctcccagGAAAGATGAATCTGTGATTTCCACAGATGGTGGAAATGAGGAGACAGACAC
EST: gi|76291396|gb|DV030964.1|DV030964
EST:     TTCCCCCGTGGACGAAGCTTCCTCCACCGGCGCCTCGCTACCTCGCCTAT                         GAAAGATGAATCTGTGATTTCCACAGATGGTGGAAATGAGGAGACAGACAC
genomic: TTCCCCCGTGGACGAAGCTTCCTCCACCGGCGCCTCGCTACCTCGCCTATgtgagcactt ... tctctcccagGAAAGATGAATCTGTGATTTCCACAGATGGTGGAAATGAGGAGACAGACAC
EST: gi|211505075|gb|FK974743.1|FK974743
EST:     TTCCCCCGTGGACGAAGCTTCCTCCACCGGCGCCTCGCTACCTCGCCTAT                         GAAAGATGAATCTGTGATTTCCACAGATGGTGGAAATGAGGAGACAGACAC
genomic: TTCCCCCGTGGACGAAGCTTCCTCCACCGGCGCCTCGCTACCTCGCCTATgtgagcactt ... tctctcccagGAAAGATGAATCTGTGATTTCCACAGATGGTGGAAATGAGGAGACAGACAC
EST: gi|89758710|gb|DY687791.1|DY687791
EST:     TTCCCCCGTGGACGAAGCTTCCTCCACCGGCGCCTCGCTACCTCGCCTAT                         GAAAGATGAATCTGTGATTTCCACAGATGGTGGAAATGAGGAGACAGACAC
genomic: TTCCCCCGTGGACGAAGCTTCCTCCACCGGCGCCTCGCTACCTCGCCTATgtgagcactt ... tctctcccagGAAAGATGAATCTGTGATTTCCACAGATGGTGGAAATGAGGAGACAGACAC
EST: gi|50323554|gb|CO518680.1|CO518680
EST:     TTCCCCCGTGGACGAAGCTTCCTCCACCGGCGCCTCGCTACCTCGCCTAT                         GAAAGATGAATCTGTGATTTCCACAGATGGTGGA--TGAGGAGACAGACAC
genomic: TTCCCCCGTGGACGAAGCTTCCTCCACCGGCGCCTCGCTACCTCGCCTATgtgagcactt ... tctctcccagGAAAGATGAATCTGTGATTTCCACAGATGGTGGAAATGAGGAGACAGACAC
EST: gi|18963822|gb|BM660649.1|BM660649
EST:     GCTTCCTCCACCGGCGCCTCGCGTACCTCGCCTAT                         GAAAGATGAATCTGTGATTTCCACAGATGGTGGAAATGAGGAGACAGGCAC
genomic: GCTTCCTCCACCGGCGCCTCGC-TACCTCGCCTATgtgagcactt ... tctctcccagGAAAGATGAATCTGTGATTTCCACAGATGGTGGAAATGAGGAGACAGACAC
EST: gi|71431215|gb|DR812265.1|DR812265
EST:     TTCCCCCGTGGACGAAGCTTCCTCCACCGGCGCCTCGCTACCTCGCCTAT                         GAAAGATGAATCTGTGATTTCCACAGATGGTGGAAATGAGGAGACAGACAC
genomic: TTCCCCCGTGGACGAAGCTTCCTCCACCGGCGCCTCGCTACCTCGCCTATgtgagcactt ... tctctcccagGAAAGATGAATCTGTGATTTCCACAGATGGTGGAAATGAGGAGACAGACAC
EST: gi|101382964|gb|EB813535.1|EB813535
EST:     TTCCCCCGTGGACGAAGCTTCCTCCACCGGCGCCTCGCTACCTCGCCTAT                         GAAAGATGAATCTGTGATTTCCACAGATGGTGGAAATGAGGAGACAGACAC
genomic: TTCCCCCGTGGACGAAGCTTCCTCCACCGGCGCCTCGCTACCTCGCCTATgtgagcactt ... tctctcccagGAAAGATGAATCTGTGATTTCCACAGATGGTGGAAATGAGGAGACAGACAC
EST: gi|91878484|gb|EB408441.1|EB408441
EST:     TTCCCCCGTGGACGAAGCTTCCTCCACCGGCGCCTCGCTACCTCGCCTAT                         GAAAGATGAATCTGTGATTTCCACAGATGGTGGAAATGAGGAGACAGACAC
genomic: TTCCCCCGTGGACGAAGCTTCCTCCACCGGCGCCTCGCTACCTCGCCTATgtgagcactt ... tctctcccagGAAAGATGAATCTGTGATTTCCACAGATGGTGGAAATGAGGAGACAGACAC
EST: gi|91876453|gb|EB406410.1|EB406410
EST:     TTCCCCCGTGGACGAAGCTTCCTCCACCGGCGCCTCGCTACCTCGCCTAT                         GAAAGATGAATCTGTGATTTCCACAGATGGTGGAAATGAGGAGACAGACAC
genomic: TTCCCCCGTGGACGAAGCTTCCTCCACCGGCGCCTCGCTACCTCGCCTATgtgagcactt ... tctctcccagGAAAGATGAATCTGTGATTTCCACAGATGGTGGAAATGAGGAGACAGACAC
EST: gi|94472235|gb|EB701193.1|EB701193
EST:     TTCCCCCGTGGACGAAGCTTCCTCCACCGGCGCCTCGCTACCTCGCCTAT                         GAAAGATGAATCTGTGATTTCCACAGATGGTGGAAATGAGGAGACAGACAC
genomic: TTCCCCCGTGGACGAAGCTTCCTCCACCGGCGCCTCGCTACCTCGCCTATgtgagcactt ... tctctcccagGAAAGATGAATCTGTGATTTCCACAGATGGTGGAAATGAGGAGACAGACAC
EST: gi|87153075|gb|DY397864.1|DY397864
EST:     CGAAGCTTCCTCCACCGGCGCCTCGCTACCTCGCCTAT                         GAAAGATGAATCTGTGATTTCCACAGATGGTGGAAATGAGGAGACAGGCAC
genomic: CGAAGCTTCCTCCACCGGCGCCTCGCTACCTCGCCTATgtgagcactt ... tctctcccagGAAAGATGAATCTGTGATTTCCACAGATGGTGGAAATGAGGAGACAGACAC
EST: gi|71429124|gb|DR810174.1|DR810174
EST:     TTCCCCCGTGGACGAAGCTTCCTCCACCGGCGCCTCGCTACCTCGCCTAT                         GAAAGATGAATCTGTGATTTCCACAGATGGTGGAAATGAGGAGACAGACAC
genomic: TTCCCCCGTGGACGAAGCTTCCTCCACCGGCGCCTCGCTACCTCGCCTATgtgagcactt ... tctctcccagGAAAGATGAATCTGTGATTTCCACAGATGGTGGAAATGAGGAGACAGACAC
EST: gi|71307824|gb|DR790133.1|DR790133
EST:     TTCCCCCGTGGACGAAGCTTCCTCCACCGGCGCCTCGCTACCTCGCCTAT                         GAAAGATGAATCTGTGATTTCCACAGATGGTGGAAATGAGGAGACAGACAC
genomic: TTCCCCCGTGGACGAAGCTTCCTCCACCGGCGCCTCGCTACCTCGCCTATgtgagcactt ... tctctcccagGAAAGATGAATCTGTGATTTCCACAGATGGTGGAAATGAGGAGACAGACAC
EST: gi|149009815|gb|EE041700.2|EE041700
EST:     TTCCCCCGTGGACGAAGCTTCCTCCACCGGCGCCTCGCTACCTCGCCTAT                         GAAAGATGAATCTGTGATTTCCACAGATGGTGGAAATGAGGAGACAGACAC
genomic: TTCCCCCGTGGACGAAGCTTCCTCCACCGGCGCCTCGCTACCTCGCCTATgtgagcactt ... tctctcccagGAAAGATGAATCTGTGATTTCCACAGATGGTGGAAATGAGGAGACAGACAC