1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ctagatatttatagcttacataacgtcacctcttatgatttattactctacctcccactatgccatacaagtaacatctctccttactgatgattgatagATCGCTGCATGGTTGAGAGCAGAAGATCAGTATGAAAATGAGTCAGGCAATCG
species | Zea mays |
transcript | GRMZM2G136389_T03 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TATTTGGCTGCTATGTTGCTCGTGAGGCTGTGATCGATGAGGAATACTGG ATCGCTGCATGGTTGAGAGCAGAAGATCAGTATGAAAATGAGTCAGGCAATEST: gi|78114509|gb|DV532898.1|DV532898
genomic: TATTTGGCTGCTATGTTGCTCGTGAGGCTGTGATCGATGAGGAATACTGGgtaataaact ... tgattgatagATCGCTGCATGGTTGAGAGCAGAAGATCAGTATGAAAATGAGTCAGGCAAT
EST: TATTTGGCTGCTATGTTGCTCGTGAGGCTGTGATCGATGAGGAATACTGG ATCGCTGCATGGTTGAGAGCAGAAGATCAGTATGAAAATGAGTCAGGCAATEST: gi|76291396|gb|DV030964.1|DV030964
genomic: TATTTGGCTGCTATGTTGCTCGTGAGGCTGTGATCGATGAGGAATACTGGgtaataaact ... tgattgatagATCGCTGCATGGTTGAGAGCAGAAGATCAGTATGAAAATGAGTCAGGCAAT
EST: TATTTGGCTGCTATGTTGCTCGTGAGGCTGTGATCGATGAGGAATACTGG ATCGCTGCATGGTTGAGAGCAGAAGATCAGTATGAAAATGAGTCAGGCAATEST: gi|89758710|gb|DY687791.1|DY687791
genomic: TATTTGGCTGCTATGTTGCTCGTGAGGCTGTGATCGATGAGGAATACTGGgtaataaact ... tgattgatagATCGCTGCATGGTTGAGAGCAGAAGATCAGTATGAAAATGAGTCAGGCAAT
EST: TATTTGGCTGCTATGTTGCTCGTGAGGCTGTGATCGATGAGGAATACTGG ATCGCTGCATGGTTGAGAGCAGAAGATCAGTATGAAAATGAGTCAGGCAATEST: gi|50323554|gb|CO518680.1|CO518680
genomic: TATTTGGCTGCTATGTTGCTCGTGAGGCTGTGATCGATGAGGAATACTGGgtaataaact ... tgattgatagATCGCTGCATGGTTGAGAGCAGAAGATCAGTATGAAAATGAGTCAGGCAAT
EST: TATTTGGCTGCTATGTTGCTCGTGAGGCTGTGATCGATGAGGAATACTGG ATCGCTGCATGGTTGAGAGCAGAAGATCAGTATGAAAATGAGTCAGGCAATEST: gi|18963822|gb|BM660649.1|BM660649
genomic: TATTTGGCTGCTATGTTGCTCGTGAGGCTGTGATCGATGAGGAATACTGGgtaataaact ... tgattgatagATCGCTGCATGGTTGAGAGCAGAAGATCAGTATGAAAATGAGTCAGGCAAT
EST: TATTTGGCTGCTATGTTGCTCGTGAGGCTGTAATCGATGAGGAATACTGG ATCGCTGCATGGTTGAGAGCAGAAGATCAGTATGAAAATGAGTCAGGCAATEST: gi|71431215|gb|DR812265.1|DR812265
genomic: TATTTGGCTGCTATGTTGCTCGTGAGGCTGTGATCGATGAGGAATACTGGgtaataaact ... tgattgatagATCGCTGCATGGTTGAGAGCAGAAGATCAGTATGAAAATGAGTCAGGCAAT
EST: TATTTGGCTGCTATGTTGCTCGTGAGGCTGTGATCGATGAGGAATACTGG ATCGCTGCATGGTTGAGAGCAGAAGATCAGTATGAAAATGAGTCAGGCAATEST: gi|101382964|gb|EB813535.1|EB813535
genomic: TATTTGGCTGCTATGTTGCTCGTGAGGCTGTGATCGATGAGGAATACTGGgtaataaact ... tgattgatagATCGCTGCATGGTTGAGAGCAGAAGATCAGTATGAAAATGAGTCAGGCAAT
EST: TATTTGGCTGCTATGTTGCTCGTGAGGCTGTGATCGATGAGGAATACTGG ATCGCTGCATGGTTGAGAGCAGAAGATCAGTATGAAAATGAGTCAGGCAATEST: gi|91878484|gb|EB408441.1|EB408441
genomic: TATTTGGCTGCTATGTTGCTCGTGAGGCTGTGATCGATGAGGAATACTGGgtaataaact ... tgattgatagATCGCTGCATGGTTGAGAGCAGAAGATCAGTATGAAAATGAGTCAGGCAAT
EST: TATTTGGCTGCTATGTTGCTCGTGAGGCTGTAATCGATGAGGAATACTGG ATCGCTGCATGGTTGAGAGCAGAAGATCAGTATGAAAATGAGTCAGGCAATEST: gi|91876453|gb|EB406410.1|EB406410
genomic: TATTTGGCTGCTATGTTGCTCGTGAGGCTGTGATCGATGAGGAATACTGGgtaataaact ... tgattgatagATCGCTGCATGGTTGAGAGCAGAAGATCAGTATGAAAATGAGTCAGGCAAT
EST: TATTTGGCTGCTATGTTGCTCGTGAGGCTGTGATCGATGAGGAATACTGG ATCGCTGCATGGTTGAGAGCAGAAGATCAGTATGAAAATGAGTCAGGCAATEST: gi|94472235|gb|EB701193.1|EB701193
genomic: TATTTGGCTGCTATGTTGCTCGTGAGGCTGTGATCGATGAGGAATACTGGgtaataaact ... tgattgatagATCGCTGCATGGTTGAGAGCAGAAGATCAGTATGAAAATGAGTCAGGCAAT
EST: TATTTGGCTGCTATGTTGCTCGTGAGGCTGTGATCGATGAGGAATACTGG ATCGCTGCATGGTTGAGAGCAGAAGATCAGTATGAAAATGAGTCAGGCAATEST: gi|87153075|gb|DY397864.1|DY397864
genomic: TATTTGGCTGCTATGTTGCTCGTGAGGCTGTGATCGATGAGGAATACTGGgtaataaact ... tgattgatagATCGCTGCATGGTTGAGAGCAGAAGATCAGTATGAAAATGAGTCAGGCAAT
EST: TATTTGGCTGCTATGTTGCTCGTGAGGCTGTAATCGATGAGGAATACTGG ATCGCTGCATGGTTGAGAGCAGAAGATCAGTATGAAAATGAGTCAGGCAATEST: gi|71429124|gb|DR810174.1|DR810174
genomic: TATTTGGCTGCTATGTTGCTCGTGAGGCTGTGATCGATGAGGAATACTGGgtaataaact ... tgattgatagATCGCTGCATGGTTGAGAGCAGAAGATCAGTATGAAAATGAGTCAGGCAAT
EST: TATTTGGCTGCTATGTTGCTCGTGAGGCTGTGATCGATGAGGAATACTGG ATCGCTGCATGGTTGAGAGCAGAAGATCAGTATGAAAATGAGTCAGGCAATEST: gi|71307824|gb|DR790133.1|DR790133
genomic: TATTTGGCTGCTATGTTGCTCGTGAGGCTGTGATCGATGAGGAATACTGGgtaataaact ... tgattgatagATCGCTGCATGGTTGAGAGCAGAAGATCAGTATGAAAATGAGTCAGGCAAT
EST: TATTTGGCTGCTATGTTGCTCGTGAGGCTGTGATCGATGAGGAATACTGG ATCGCTGCATGGTTGAGAGCAGAAGATCAGTATGAAAATGAGTCAGGCAATEST: gi|149009815|gb|EE041700.2|EE041700
genomic: TATTTGGCTGCTATGTTGCTCGTGAGGCTGTGATCGATGAGGAATACTGGgtaataaact ... tgattgatagATCGCTGCATGGTTGAGAGCAGAAGATCAGTATGAAAATGAGTCAGGCAAT
EST: TATTTGGCTGCTATGTTGCTCGTGAGGCTGTGATCGATGAGGAATACTGG ATCGCTGCATGGTTGAGAGCAGAAGATCAGTATGAAAATGAGTCAGGCAAT
genomic: TATTTGGCTGCTATGTTGCTCGTGAGGCTGTGATCGATGAGGAATACTGGgtaataaact ... tgattgatagATCGCTGCATGGTTGAGAGCAGAAGATCAGTATGAAAATGAGTCAGGCAAT
ctctacctcccactatgccatacaagtaacatctctccttactgatgattgatagATCGCTGCATGGTTGAGAGCAGAAGATCAGTATGAAAATGAGTCAGGCAATCG
tactgat putative branch site (score: 2)
attgata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctagatatttatagcttacataacgtcacctcttatgatttattactctacctcccactatgccatacaagtaacatctctccttactgatgattgatagATCGCTGCATGGTTGAGAGCAGAAGATCAGTATGAAAATGAGTCAGGCAATCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gccatac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttactg