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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATGGAAAGGTCTATGTAACCATCGCAAAGAAGATTCTAGAGAAAGGCAACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAGgtgggaaacgcctacctcgcaagatgtctcatgaaacatcctcttttgggacaactcaccgtacagatttgattactcatatctctttttccctgttgcag

Basic information

species Zea mays
transcript GRMZM2G128171_T04
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G128171_T04 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os01g23740.1 (Oryza sativa), 5'ss of exon 10
GCATGGAAAGGTCTATGTAACCATCGCAAAGAAGATTCTAGAGAAAGGCAACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAGgtgggaaacgcctacctcg----caagatgtctcatgaaacatcctcttttgggacaactcacc-gtacagatttgattactcatatctctttttccctgttgcag
|||||||||||||||  |  |||| |||||||| || || || |||||  |||| |||||  ||||||||||  |||||||||| ||||| ||||||||||||||||||    | | |     |||  | |   || |    || ||||     |  |   ||  ||||  ||   ||   |  |   | ||||| | |  |||||
GCATGGAAAGGTCTACATTGCCATTGCAAAGAAAATCCTGGACAAAGGTCACGACTATACCAAGAAGGAAACAGAGAGGCTTGAACGCATGTTGGAGAAGgtgggaaaccgtgatcgccaatccaaactttactatcacttgtcatcttacataatgaacgacttgtacttatacaatacttttttattttttttgcttcctgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60395775|gb|DN228645.1|DN228645
EST:     ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAG                         TCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
genomic: ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAGgtgggaaacg ... cctgttgcagTCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
EST: gi|61119825|gb|DN560786.1|DN560786
EST:     ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATGTTGGAGAAG                         TCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
genomic: ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAGgtgggaaacg ... cctgttgcagTCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
EST: gi|6194495|gb|AW146599.1|AW146599
EST:     ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAG                         TCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
genomic: ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAGgtgggaaacg ... cctgttgcagTCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
EST: gi|32850005|gb|CD989686.1|CD989686
EST:     ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATGTTGGAGAAG                         TCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
genomic: ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAGgtgggaaacg ... cctgttgcagTCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
EST: gi|40337309|gb|CK371379.1|CK371379
EST:     ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATGTTGGAGAAG                         TCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
genomic: ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAGgtgggaaacg ... cctgttgcagTCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
EST: gi|60338792|gb|DN205765.1|DN205765
EST:     ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAG                         TCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
genomic: ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAGgtgggaaacg ... cctgttgcagTCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
EST: gi|60351178|gb|DN218151.1|DN218151
EST:     ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATGTTGGAGAAG                         TCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
genomic: ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAGgtgggaaacg ... cctgttgcagTCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
EST: gi|32847429|gb|CD987110.1|CD987110
EST:     ACGAGTATACTGAGAAGGAAACCAGGAGGCTTGATCGCATGTTGGAGAAG                         TCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
genomic: ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAGgtgggaaacg ... cctgttgcagTCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
EST: gi|32834519|gb|CD974197.1|CD974197
EST:     ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATGTTGGAGAAG                         TCCATCAGCCCCTCCAAGGCCGACGAGTTTATCGTCAAGAAGAACGTTCTT
genomic: ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAGgtgggaaacg ... cctgttgcagTCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
EST: gi|32835606|gb|CD975284.1|CD975284
EST:     ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATGTTGGAGAAG                         TCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
genomic: ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAGgtgggaaacg ... cctgttgcagTCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
EST: gi|71309002|gb|DR790766.1|DR790766
EST:     ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAG                         TCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
genomic: ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAGgtgggaaacg ... cctgttgcagTCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
EST: gi|109637370|gb|EC590915.1|EC590915
EST:     ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATGTTGGAGAAG                         TCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
genomic: ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAGgtgggaaacg ... cctgttgcagTCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
EST: gi|6695734|gb|AW288812.1|AW288812
EST:     ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGGATCTTGGAGAAG                         TCCATCAGCCCCTCCAAGGCCGACGAG
genomic: ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAGgtgggaaacg ... cctgttgcagTCCATCAGCCCCTCCAAGGCCGACGAG
EST: gi|37397027|gb|CF635808.1|CF635808
EST:     ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATGTTGGAGAAG                         TCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
genomic: ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAGgtgggaaacg ... cctgttgcagTCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
EST: gi|71324808|gb|DR799110.1|DR799110
EST:     ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAG                         TCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
genomic: ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAGgtgggaaacg ... cctgttgcagTCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
EST: gi|37398024|gb|CF636321.1|CF636321
EST:     ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATGTTGGAGAAG                         TCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
genomic: ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAGgtgggaaacg ... cctgttgcagTCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
EST: gi|32932741|gb|CF037553.1|CF037553
EST:     ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATGTTGGAGAAG                         TCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
genomic: ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAGgtgggaaacg ... cctgttgcagTCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
EST: gi|78117469|gb|DV535856.1|DV535856
EST:     ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAG                         TCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
genomic: ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAGgtgggaaacg ... cctgttgcagTCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
EST: gi|33100651|gb|CF060611.1|CF060611
EST:     ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATGTTGGAGAAG                         TCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
genomic: ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAGgtgggaaacg ... cctgttgcagTCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
EST: gi|71311893|gb|DR792421.1|DR792421
EST:     ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAG                         TCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
genomic: ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAGgtgggaaacg ... cctgttgcagTCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
EST: gi|33091740|gb|CF051734.1|CF051734
EST:     ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATGTTGGAGAAG                         TCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
genomic: ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAGgtgggaaacg ... cctgttgcagTCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
EST: gi|211522923|gb|FL453798.1|FL453798
EST:     ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATGTTGGAGAAG                         TCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
genomic: ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAGgtgggaaacg ... cctgttgcagTCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
EST: gi|32835628|gb|CD975306.1|CD975306
EST:     ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATGTTGGAGAAG                         TCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
genomic: ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAGgtgggaaacg ... cctgttgcagTCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
EST: gi|95107641|gb|EB739870.1|EB739870
EST:     ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATGTTGGAGAAG                         TCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
genomic: ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAGgtgggaaacg ... cctgttgcagTCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
EST: gi|60357338|gb|DN224311.1|DN224311
EST:     ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAG                         TCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
genomic: ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAGgtgggaaacg ... cctgttgcagTCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
EST: gi|213192824|gb|FM186338.1|FM186338
EST:     ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATGTTGGAGAAG                         TCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
genomic: ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAGgtgggaaacg ... cctgttgcagTCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
EST: gi|78118069|gb|DV536456.1|DV536456
EST:     ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAG                         TCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
genomic: ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAGgtgggaaacg ... cctgttgcagTCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
EST: gi|60349916|gb|DN216889.1|DN216889
EST:     ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAG                         TCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
genomic: ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAGgtgggaaacg ... cctgttgcagTCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
EST: gi|5915189|gb|AW052830.1|AW052830
EST:     ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAG                         TCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
genomic: ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAGgtgggaaacg ... cctgttgcagTCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
EST: gi|33101458|gb|CF061418.1|CF061418
EST:     ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATGTTGGAGAAG                         TCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
genomic: ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAGgtgggaaacg ... cctgttgcagTCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
EST: gi|32848874|gb|CD988555.1|CD988555
EST:     ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATGTTGGAGAAG                         TCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
genomic: ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAGgtgggaaacg ... cctgttgcagTCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
EST: gi|32835183|gb|CD974861.1|CD974861
EST:     ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATGTTGGAGAAG                         TCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
genomic: ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAGgtgggaaacg ... cctgttgcagTCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
EST: gi|4874414|gb|AI673934.1|AI673934
EST:     ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATGTTGGAGAAG                         TCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
genomic: ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAGgtgggaaacg ... cctgttgcagTCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
EST: gi|67024496|gb|CO453245.1|CO453245
EST:     ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAG                         TCCA---GCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
genomic: ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAGgtgggaaacg ... cctgttgcagTCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
EST: gi|56382282|gb|CV984951.1|CV984951
EST:     GAAACCAAGAGGCTTGATCGCATGTTGGAGAAG                         TCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
genomic: GAAACCAAGAGGCTTGATCGCATCTTGGAGAAGgtgggaaacg ... cctgttgcagTCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
EST: gi|32847075|gb|CD986756.1|CD986756
EST:     ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATGTTGGAGAAG                         TCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
genomic: ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAGgtgggaaacg ... cctgttgcagTCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
EST: gi|5152756|gb|AI759054.1|AI759054
EST:     ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATGTTGGAGAAG                         TCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
genomic: ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAGgtgggaaacg ... cctgttgcagTCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
EST: gi|15208731|gb|BI430615.1|BI430615
EST:     ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATGTTGGAGAAG                         TCCATCAGCCCCTCCAAGGCCGA
genomic: ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAGgtgggaaacg ... cctgttgcagTCCATCAGCCCCTCCAAGGCCGA
EST: gi|32832115|gb|CD971793.1|CD971793
EST:     ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATGTTGGAGAAG                         TCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
genomic: ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAGgtgggaaacg ... cctgttgcagTCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
EST: gi|14206757|gb|BG840435.1|BG840435
EST:     ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAG                         TCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
genomic: ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAGgtgggaaacg ... cctgttgcagTCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
EST: gi|14244533|gb|BG840280.2|BG840280
EST:     AGTATACTGAGAAGGAAGCCAAGAGGCTTGATCGCATCTTGGAGAAG                         TCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
genomic: AGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAGgtgggaaacg ... cctgttgcagTCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
EST: gi|78125860|gb|DV544244.1|DV544244
EST:     ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAG                         TCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
genomic: ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAGgtgggaaacg ... cctgttgcagTCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
EST: gi|110518990|gb|EE023577.1|EE023577
EST:     ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAG                         TCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
genomic: ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAGgtgggaaacg ... cctgttgcagTCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
EST: gi|16925710|gb|BM078778.1|BM078778
EST:     ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAG                         TCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
genomic: ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAGgtgggaaacg ... cctgttgcagTCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
EST: gi|5713839|gb|AI943824.1|AI943824
EST:     ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAG                         TCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
genomic: ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAGgtgggaaacg ... cctgttgcagTCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
EST: gi|18173059|gb|BM348447.1|BM348447
EST:     ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAG                         TCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
genomic: ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAGgtgggaaacg ... cctgttgcagTCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
EST: gi|148936841|gb|EC880982.2|EC880982
EST:     ACGAGTATTCTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAG                         TCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
genomic: ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAGgtgggaaacg ... cctgttgcagTCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
EST: gi|78021204|gb|DV489591.1|DV489591
EST:     ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAG                         TCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
genomic: ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAGgtgggaaacg ... cctgttgcagTCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
EST: gi|84908621|gb|DW404499.1|DW404499
EST:     ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATGTTGGAGAAG                         TCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTCCTT
genomic: ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAGgtgggaaacg ... cctgttgcagTCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCATGGAAAGGTCTATGTAACCATCGCAAAGAAGATTCTAGAGAAAGGCAACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAGgtgggaaacgcctacctcgcaagatgtctcatgaaacatcctcttttgggacaactcaccgtacagatttgattactcatatctctttttccctgttgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAA