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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggaaacgcctacctcgcaagatgtctcatgaaacatcctcttttgggacaactcaccgtacagatttgattactcatatctctttttccctgttgcagTCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTTTCGACTTTCTCATCCTAAGGCATCTGCTAGCTCCATTTTCACGTTTCAG

Basic information

species Zea mays
transcript GRMZM2G128171_T04
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G128171_T04 (Zea mays), 3'ss of exon 9
lower sequence: LOC_Os01g23740.1 (Oryza sativa), 3'ss of exon 10
gtgggaaacgcctacctcg----caagatgtctcatgaaacatcctcttttgggacaactcacc-gtacagatttgattactcatatctctttttccctgttgcagTCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTTTCGACTTTCTCATCCTAAGGCATCTGCTAGCTCCATTTTCACGTTTCAG
|||||||||    | | |     |||  | |   || |    || ||||     |  |   ||  ||||  ||   ||   |  |   | ||||| | |  |||||||||||||||| || |||||||| || || ||||||||||||||||| ||||| || ||||| |||||||||     | | ||||||| | |  |||  |
gtgggaaaccgtgatcgccaatccaaactttactatcacttgtcatcttacataatgaacgacttgtacttatacaatacttttttattttttttgcttcctgcagTCCATCAGCCCATCAAAGGCCGATGAATTCATCATCAAGAAGAACGTCCTTTCAACCTTCTCTTCCTAAGGCGATGTCAAACTCCATTCTTATCTTTGGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60395775|gb|DN228645.1|DN228645
EST:     ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAG                         TCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
genomic: ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAGgtgggaaacg ... cctgttgcagTCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
EST: gi|61119825|gb|DN560786.1|DN560786
EST:     ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATGTTGGAGAAG                         TCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
genomic: ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAGgtgggaaacg ... cctgttgcagTCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
EST: gi|6194495|gb|AW146599.1|AW146599
EST:     ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAG                         TCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
genomic: ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAGgtgggaaacg ... cctgttgcagTCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
EST: gi|32850005|gb|CD989686.1|CD989686
EST:     ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATGTTGGAGAAG                         TCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
genomic: ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAGgtgggaaacg ... cctgttgcagTCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
EST: gi|40337309|gb|CK371379.1|CK371379
EST:     ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATGTTGGAGAAG                         TCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
genomic: ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAGgtgggaaacg ... cctgttgcagTCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
EST: gi|60338792|gb|DN205765.1|DN205765
EST:     ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAG                         TCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
genomic: ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAGgtgggaaacg ... cctgttgcagTCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
EST: gi|60351178|gb|DN218151.1|DN218151
EST:     ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATGTTGGAGAAG                         TCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
genomic: ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAGgtgggaaacg ... cctgttgcagTCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
EST: gi|32847429|gb|CD987110.1|CD987110
EST:     ACGAGTATACTGAGAAGGAAACCAGGAGGCTTGATCGCATGTTGGAGAAG                         TCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
genomic: ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAGgtgggaaacg ... cctgttgcagTCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
EST: gi|32834519|gb|CD974197.1|CD974197
EST:     ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATGTTGGAGAAG                         TCCATCAGCCCCTCCAAGGCCGACGAGTTTATCGTCAAGAAGAACGTTCTT
genomic: ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAGgtgggaaacg ... cctgttgcagTCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
EST: gi|32835606|gb|CD975284.1|CD975284
EST:     ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATGTTGGAGAAG                         TCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
genomic: ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAGgtgggaaacg ... cctgttgcagTCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
EST: gi|71309002|gb|DR790766.1|DR790766
EST:     ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAG                         TCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
genomic: ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAGgtgggaaacg ... cctgttgcagTCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
EST: gi|109637370|gb|EC590915.1|EC590915
EST:     ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATGTTGGAGAAG                         TCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
genomic: ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAGgtgggaaacg ... cctgttgcagTCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
EST: gi|6695734|gb|AW288812.1|AW288812
EST:     ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGGATCTTGGAGAAG                         TCCATCAGCCCCTCCAAGGCCGACGAG
genomic: ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAGgtgggaaacg ... cctgttgcagTCCATCAGCCCCTCCAAGGCCGACGAG
EST: gi|37397027|gb|CF635808.1|CF635808
EST:     ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATGTTGGAGAAG                         TCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
genomic: ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAGgtgggaaacg ... cctgttgcagTCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
EST: gi|71324808|gb|DR799110.1|DR799110
EST:     ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAG                         TCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
genomic: ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAGgtgggaaacg ... cctgttgcagTCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
EST: gi|37398024|gb|CF636321.1|CF636321
EST:     ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATGTTGGAGAAG                         TCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
genomic: ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAGgtgggaaacg ... cctgttgcagTCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
EST: gi|32932741|gb|CF037553.1|CF037553
EST:     ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATGTTGGAGAAG                         TCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
genomic: ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAGgtgggaaacg ... cctgttgcagTCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
EST: gi|78117469|gb|DV535856.1|DV535856
EST:     ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAG                         TCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
genomic: ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAGgtgggaaacg ... cctgttgcagTCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
EST: gi|33100651|gb|CF060611.1|CF060611
EST:     ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATGTTGGAGAAG                         TCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
genomic: ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAGgtgggaaacg ... cctgttgcagTCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
EST: gi|71311893|gb|DR792421.1|DR792421
EST:     ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAG                         TCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
genomic: ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAGgtgggaaacg ... cctgttgcagTCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
EST: gi|33091740|gb|CF051734.1|CF051734
EST:     ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATGTTGGAGAAG                         TCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
genomic: ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAGgtgggaaacg ... cctgttgcagTCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
EST: gi|211522923|gb|FL453798.1|FL453798
EST:     ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATGTTGGAGAAG                         TCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
genomic: ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAGgtgggaaacg ... cctgttgcagTCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
EST: gi|32835628|gb|CD975306.1|CD975306
EST:     ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATGTTGGAGAAG                         TCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
genomic: ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAGgtgggaaacg ... cctgttgcagTCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
EST: gi|95107641|gb|EB739870.1|EB739870
EST:     ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATGTTGGAGAAG                         TCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
genomic: ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAGgtgggaaacg ... cctgttgcagTCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
EST: gi|60357338|gb|DN224311.1|DN224311
EST:     ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAG                         TCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
genomic: ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAGgtgggaaacg ... cctgttgcagTCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
EST: gi|213192824|gb|FM186338.1|FM186338
EST:     ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATGTTGGAGAAG                         TCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
genomic: ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAGgtgggaaacg ... cctgttgcagTCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
EST: gi|78118069|gb|DV536456.1|DV536456
EST:     ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAG                         TCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
genomic: ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAGgtgggaaacg ... cctgttgcagTCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
EST: gi|60349916|gb|DN216889.1|DN216889
EST:     ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAG                         TCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
genomic: ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAGgtgggaaacg ... cctgttgcagTCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
EST: gi|5915189|gb|AW052830.1|AW052830
EST:     ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAG                         TCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
genomic: ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAGgtgggaaacg ... cctgttgcagTCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
EST: gi|33101458|gb|CF061418.1|CF061418
EST:     ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATGTTGGAGAAG                         TCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
genomic: ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAGgtgggaaacg ... cctgttgcagTCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
EST: gi|32848874|gb|CD988555.1|CD988555
EST:     ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATGTTGGAGAAG                         TCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
genomic: ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAGgtgggaaacg ... cctgttgcagTCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
EST: gi|32835183|gb|CD974861.1|CD974861
EST:     ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATGTTGGAGAAG                         TCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
genomic: ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAGgtgggaaacg ... cctgttgcagTCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
EST: gi|4874414|gb|AI673934.1|AI673934
EST:     ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATGTTGGAGAAG                         TCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
genomic: ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAGgtgggaaacg ... cctgttgcagTCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
EST: gi|67024496|gb|CO453245.1|CO453245
EST:     ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAG                         TCCA---GCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
genomic: ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAGgtgggaaacg ... cctgttgcagTCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
EST: gi|56382282|gb|CV984951.1|CV984951
EST:     GAAACCAAGAGGCTTGATCGCATGTTGGAGAAG                         TCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
genomic: GAAACCAAGAGGCTTGATCGCATCTTGGAGAAGgtgggaaacg ... cctgttgcagTCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
EST: gi|32847075|gb|CD986756.1|CD986756
EST:     ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATGTTGGAGAAG                         TCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
genomic: ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAGgtgggaaacg ... cctgttgcagTCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
EST: gi|5152756|gb|AI759054.1|AI759054
EST:     ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATGTTGGAGAAG                         TCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
genomic: ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAGgtgggaaacg ... cctgttgcagTCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
EST: gi|15208731|gb|BI430615.1|BI430615
EST:     ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATGTTGGAGAAG                         TCCATCAGCCCCTCCAAGGCCGA
genomic: ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAGgtgggaaacg ... cctgttgcagTCCATCAGCCCCTCCAAGGCCGA
EST: gi|32832115|gb|CD971793.1|CD971793
EST:     ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATGTTGGAGAAG                         TCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
genomic: ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAGgtgggaaacg ... cctgttgcagTCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
EST: gi|14206757|gb|BG840435.1|BG840435
EST:     ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAG                         TCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
genomic: ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAGgtgggaaacg ... cctgttgcagTCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
EST: gi|14244533|gb|BG840280.2|BG840280
EST:     AGTATACTGAGAAGGAAGCCAAGAGGCTTGATCGCATCTTGGAGAAG                         TCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
genomic: AGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAGgtgggaaacg ... cctgttgcagTCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
EST: gi|78125860|gb|DV544244.1|DV544244
EST:     ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAG                         TCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
genomic: ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAGgtgggaaacg ... cctgttgcagTCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
EST: gi|110518990|gb|EE023577.1|EE023577
EST:     ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAG                         TCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
genomic: ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAGgtgggaaacg ... cctgttgcagTCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
EST: gi|16925710|gb|BM078778.1|BM078778
EST:     ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAG                         TCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
genomic: ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAGgtgggaaacg ... cctgttgcagTCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
EST: gi|5713839|gb|AI943824.1|AI943824
EST:     ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAG                         TCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
genomic: ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAGgtgggaaacg ... cctgttgcagTCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
EST: gi|18173059|gb|BM348447.1|BM348447
EST:     ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAG                         TCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
genomic: ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAGgtgggaaacg ... cctgttgcagTCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
EST: gi|148936841|gb|EC880982.2|EC880982
EST:     ACGAGTATTCTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAG                         TCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
genomic: ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAGgtgggaaacg ... cctgttgcagTCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
EST: gi|78021204|gb|DV489591.1|DV489591
EST:     ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAG                         TCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
genomic: ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAGgtgggaaacg ... cctgttgcagTCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT
EST: gi|84908621|gb|DW404499.1|DW404499
EST:     ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATGTTGGAGAAG                         TCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTCCTT
genomic: ACGAGTATACTGAGAAGGAAACCAAGAGGCTTGATCGCATCTTGGAGAAGgtgggaaacg ... cctgttgcagTCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgggacaactcaccgtacagatttgattactcatatctctttttccctgttgcagTCCATCAGCCCCTCCAAGGCCGACGAGTTTATCATCAAGAAGAACGTTCTTTCGACTTTCTCATCCTAAGGCATCTGCTAGCTCCATTTTCACGTTTCAG
                          ttactcatatctcttt  CT-rich tract
                    atttgatta  TA-rich tract