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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGTATGAGAAGGTGGCTTCTGTTTTCAAGTTGGATGAAGGAGTTGTTATTGCTAACCTTGACGCTGACAAACACAGGGATTTGGCTGAGAAgtatgttctgtgtcttacattcacatatgctttatctgcatctgtttccctatttgtgttacctagcagctagcactggagcatgatcttgtttccctttgaatactagtcactagtatttgtttgcaacaaataacaccttattatttctgacttgttctatacgcaatatactgtacttatcacactacatcag

Basic information

species Zea mays
transcript GRMZM2G128171_T04
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G128171_T04 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os01g23740.2 (Oryza sativa), 5'ss of exon 7
ACGTATGAGAAGGTGGCTTCTGTTTTCAAGTTGGATGAAGGAGTTGTTATTGCTAACCTTGACGCTGACAAACACAGGGATTTGGCTGAGAAgtatgttctgtgtcttacattcacatatgct-ttatctgcat-ctgtttc-cctatttgtgttacctagcagctagcactggagcatgatcttgtttccctttgaatactagtcactagtatttgtttgcaacaaataacaccttattatttctgacttgttctatacgcaatatactgtacttatcacactacatcag
|  ||||||||| ||||||||||||  |||||||| || |||||||| |||||||||||||| |||||||||||||  || ||||| || ||||||||||||  |     || |  | ||| | | |||||| | ||||||  ||||||  |||||      | || |  |      ||| |   |||| ||  || | || |                                                                                        
ATATATGAGAAGCTGGCTTCTGTTTATAAGTTGGACGATGGAGTTGTAATTGCTAACCTTGATGCTGACAAACACAAAGACTTGGCCGAAAAgtatgttctgactt----atccgta-atgttatcatctgcgttctgtttttcctattgctgtta------atcttgtgccctgagatgctacagttttcccatggacacaa----------------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60395775|gb|DN228645.1|DN228645
EST:     GTTGTTATTGCTAACCTTGACGCTGACAAACACAGGGATTTGGCTGAGAA                         GTATGGAGTTAGTGGATTTCCTACCTTGAAGTTTTTCCCAAAGGGAAACAA
genomic: GTTGTTATTGCTAACCTTGACGCTGACAAACACAGGGATTTGGCTGAGAAgtatgttctg ... actacatcagGTATGGAGTTAGTGGATTTCCTACCTTGAAGTTTTTCCCAAAGGGAAACAA
EST: gi|40337309|gb|CK371379.1|CK371379
EST:     GTTGTTATTGCTAACCTTGACGCTGACAAACACAGGGATTTGGCTGAGAA                         GTATGGAGTTAGTGGATTTCCTACCTTGAAGTTTTTCCCAAAGGGAAACAA
genomic: GTTGTTATTGCTAACCTTGACGCTGACAAACACAGGGATTTGGCTGAGAAgtatgttctg ... actacatcagGTATGGAGTTAGTGGATTTCCTACCTTGAAGTTTTTCCCAAAGGGAAACAA
EST: gi|60338792|gb|DN205765.1|DN205765
EST:     GTTGTTATTGCTAACCTTGACGCTGACAAACACAGGGATTTGGCTGAGAA                         GTATGGAGTTAGTGGATTTCCTACCTTGAAGTTTTTCCCAAAGGGAAACAA
genomic: GTTGTTATTGCTAACCTTGACGCTGACAAACACAGGGATTTGGCTGAGAAgtatgttctg ... actacatcagGTATGGAGTTAGTGGATTTCCTACCTTGAAGTTTTTCCCAAAGGGAAACAA
EST: gi|60351178|gb|DN218151.1|DN218151
EST:     GTTGTTATTGCTAACCTTGACGCTGACAAACACAGGGATTTGGCTGAGAA                         GTATGGAGTTAGTGGATTTCCTACCTTGAAGTTTTTCCCAAAGGGAAACAA
genomic: GTTGTTATTGCTAACCTTGACGCTGACAAACACAGGGATTTGGCTGAGAAgtatgttctg ... actacatcagGTATGGAGTTAGTGGATTTCCTACCTTGAAGTTTTTCCCAAAGGGAAACAA
EST: gi|71324808|gb|DR799110.1|DR799110
EST:     CACAGGGATTTGGCTGAGAA                         GTATGGAGTTAGTGGATTTCCTACCTTGAAGTTTTTCCCAAAGGGAAACAA
genomic: CACAGGGATTTGGCTGAGAAgtatgttctg ... actacatcagGTATGGAGTTAGTGGATTTCCTACCTTGAAGTTTTTCCCAAAGGGAAACAA
EST: gi|37398024|gb|CF636321.1|CF636321
EST:     GTTGTTATTGCTAACCTTGACGCTGACAAACACAGGGATTTGGCTGAGAA                         GTATGGAGTTAGTGGATTTCCTACCTTGAAGTTTTTCCCAAAGGGAAACAA
genomic: GTTGTTATTGCTAACCTTGACGCTGACAAACACAGGGATTTGGCTGAGAAgtatgttctg ... actacatcagGTATGGAGTTAGTGGATTTCCTACCTTGAAGTTTTTCCCAAAGGGAAACAA
EST: gi|71311893|gb|DR792421.1|DR792421
EST:     GTTGTTATTGCTAACCTTGACGCTGACAAACACAGGGATTTGGCTGAGAA                         GTATGGAGTTAGTGGATTTCCTACCTTGAAGTTTTTCCCAAAGGGAAACAA
genomic: GTTGTTATTGCTAACCTTGACGCTGACAAACACAGGGATTTGGCTGAGAAgtatgttctg ... actacatcagGTATGGAGTTAGTGGATTTCCTACCTTGAAGTTTTTCCCAAAGGGAAACAA
EST: gi|78118069|gb|DV536456.1|DV536456
EST:     TTGGCTGAGAA                         GTATGGAGTTAGTGGATTTCCTACC-TGAAAGTTTTTCCCAAAGGGAAACA
genomic: TTGGCTGAGAAgtatgttctg ... actacatcagGTATGGAGTTAGTGGATTTCCTACCTTG-AAGTTTTTCCCAAAGGGAAACA
EST: gi|60349916|gb|DN216889.1|DN216889
EST:     GTTGTTATTGCTAACCTTGACGCTGACAAACACAGGGATTTGGCTGAGAA                         GTATGGAGTTAGTGGATTTCCTACCTTGAAGTTTTTCCCAAAGGGAAACAA
genomic: GTTGTTATTGCTAACCTTGACGCTGACAAACACAGGGATTTGGCTGAGAAgtatgttctg ... actacatcagGTATGGAGTTAGTGGATTTCCTACCTTGAAGTTTTTCCCAAAGGGAAACAA
EST: gi|4874414|gb|AI673934.1|AI673934
EST:     GTTGTTATTGCTAACCTTGACGCTGACAAACACAGGGATTTGGCTGAGAA                         GTATGGAGTTAGTGGATTTCCTACCTTGAAGTTTTTCCCAAAGGGAAACAA
genomic: GTTGTTATTGCTAACCTTGACGCTGACAAACACAGGGATTTGGCTGAGAAgtatgttctg ... actacatcagGTATGGAGTTAGTGGATTTCCTACCTTGAAGTTTTTCCCAAAGGGAAACAA
EST: gi|67024496|gb|CO453245.1|CO453245
EST:     GTTGTTATTGCTAACCTTGACGCTGACAAACACAGGGATTTGGCTGAGAA                         GTATGGAGTTAGTGGATTTCCTACCTTGAAGTTTTTCCCAAAGGGAAACAA
genomic: GTTGTTATTGCTAACCTTGACGCTGACAAACACAGGGATTTGGCTGAGAAgtatgttctg ... actacatcagGTATGGAGTTAGTGGATTTCCTACCTTGAAGTTTTTCCCAAAGGGAAACAA
EST: gi|5152756|gb|AI759054.1|AI759054
EST:     GTTGTTATTGCTAACCTTGACGCTGACAAACACAGGGATTTGGCTGAGAA                         GTATGGAGTTAGTGGATTTCCTACCTTGAAGTTTTTCCCAAAGGGAAACAA
genomic: GTTGTTATTGCTAACCTTGACGCTGACAAACACAGGGATTTGGCTGAGAAgtatgttctg ... actacatcagGTATGGAGTTAGTGGATTTCCTACCTTGAAGTTTTTCCCAAAGGGAAACAA
EST: gi|14206757|gb|BG840435.1|BG840435
EST:     GTTGTTATTGCTAACCTTGACGCTGACAAACACAGGGATTTGGCTGAGAA                         GTATGGAGTTAGTGGATTTCCTACCTTGAAGTTTTTCCCAAAGGGAAACAA
genomic: GTTGTTATTGCTAACCTTGACGCTGACAAACACAGGGATTTGGCTGAGAAgtatgttctg ... actacatcagGTATGGAGTTAGTGGATTTCCTACCTTGAAGTTTTTCCCAAAGGGAAACAA
EST: gi|78125860|gb|DV544244.1|DV544244
EST:     AACACAGGGATTTGGCTGAGAA                         GTATGGAGTTAGTGGATTTCCTACCTTGAAGTTTTTCCCAAAGGGAAACAA
genomic: AACACAGGGATTTGGCTGAGAAgtatgttctg ... actacatcagGTATGGAGTTAGTGGATTTCCTACCTTGAAGTTTTTCCCAAAGGGAAACAA