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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCTGGCTAAGGAGTTCCTTGGTGCTTCCGGTGACAAGCGAAAGGAAGTCCTCTCCAGTATGGAGGAGGAGGCAGATAAGCTCAGTGGTTCTGCTGCAAGgtaaactcttcccttagttattggcctatctgccttgagctattcattgatctcaattaacgttataagaatgttattagttaagtgagttgaattttccttattgcgtaataaatcag

Basic information

species Zea mays
transcript GRMZM2G128171_T04
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G128171_T04 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os01g23740.1 (Oryza sativa), 5'ss of exon 9
TCCTGGCTAAGGAGTTCCTTGGTGCTTCCGGTGACAAGCGAAAGGAAGTCCTCTCCAGTATGGAGGAGGAGGCAGATAAGCTCAGTGGTTCTGCTGCAAGgtaaactcttcccttagtta---ttggcctatctgccttga-gctattcattgatctcaattaacgttataagaatgttattagttaagtgagttgaattttccttattgcgtaataaatcag
 ||| || |||||||||||||||||| ||  ||||||||| |||||| ||||||||| |||||| |||||||  |  |||||||||||||||||||||| |||||||||   || ||||    ||    | | |||  ||| | |||   |  ||   | || |   |    | || |   || |||| | ||                              
CCCTCGCAAAGGAGTTCCTTGGTGCTGCCAATGACAAGCGGAAGGAAATCCTCTCCAATATGGAAGAGGAGGTTGTGAAGCTCAGTGGTTCTGCTGCAAAgtaaactctagtctaagttgcatttattatttttgcaatgacgttatctgtacatgcaagttgaacctt--ggcatttacatatttaaatcag------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60395775|gb|DN228645.1|DN228645
EST:     CTCTCCAGTATGGAGGAGGAGGCAGATAAGCTCAGTGGTTCTGCTGCAAG                         GCATGGAAAGGTCTATGTAACCATCGCAAAGAAGATTCTAGAGAAAGGCAA
genomic: CTCTCCAGTATGGAGGAGGAGGCAGATAAGCTCAGTGGTTCTGCTGCAAGgtaaactctt ... aataaatcagGCATGGAAAGGTCTATGTAACCATCGCAAAGAAGATTCTAGAGAAAGGCAA
EST: gi|61119825|gb|DN560786.1|DN560786
EST:     TAAGCTCAGTGGTTCTGCTGCAAG                         GCATGGAAAGGTCTATGTAACCATCGCAAAGAAGATTCTAGAGAAAGGCAA
genomic: TAAGCTCAGTGGTTCTGCTGCAAGgtaaactctt ... aataaatcagGCATGGAAAGGTCTATGTAACCATCGCAAAGAAGATTCTAGAGAAAGGCAA
EST: gi|6194495|gb|AW146599.1|AW146599
EST:     CTCTCCAGTATGGAGGAGGAGGCAGATAAGCTCAGTGGTTCTGCTGCAAG                         GCATGGAAAGGTCTATGTAACCATCGCAAAGAAGATTCTAGAGAAAGGCAA
genomic: CTCTCCAGTATGGAGGAGGAGGCAGATAAGCTCAGTGGTTCTGCTGCAAGgtaaactctt ... aataaatcagGCATGGAAAGGTCTATGTAACCATCGCAAAGAAGATTCTAGAGAAAGGCAA
EST: gi|32850005|gb|CD989686.1|CD989686
EST:     CTCTCCAGTATGGAGGAGGAGGCAGATAAGCTCAGTGGTTCTGCTGCAAG                         GCATGGAAAGGTCTATGTAACCATCGCAAAGAAGATTCTAGAGAAAGGCAA
genomic: CTCTCCAGTATGGAGGAGGAGGCAGATAAGCTCAGTGGTTCTGCTGCAAGgtaaactctt ... aataaatcagGCATGGAAAGGTCTATGTAACCATCGCAAAGAAGATTCTAGAGAAAGGCAA
EST: gi|40337309|gb|CK371379.1|CK371379
EST:     CTCTCCAGTATGGAGGAGGAGGCAGATAAGCTCAGTGGTTCTGCTGCAAG                         GCATGGAAAGGTCTATGTAACCATCGCAAAGAAGATTCTAGAGAAAGGCAA
genomic: CTCTCCAGTATGGAGGAGGAGGCAGATAAGCTCAGTGGTTCTGCTGCAAGgtaaactctt ... aataaatcagGCATGGAAAGGTCTATGTAACCATCGCAAAGAAGATTCTAGAGAAAGGCAA
EST: gi|60338792|gb|DN205765.1|DN205765
EST:     CTCTCCAGTATGGAGGAGGAGGCAGATAAGCTCAGTGGTTCTGCTGCAAG                         GCATGGAAAGGTCTATGTAACCATCGCAAAGAAGATTCTAGAGAAAGGCAA
genomic: CTCTCCAGTATGGAGGAGGAGGCAGATAAGCTCAGTGGTTCTGCTGCAAGgtaaactctt ... aataaatcagGCATGGAAAGGTCTATGTAACCATCGCAAAGAAGATTCTAGAGAAAGGCAA
EST: gi|60351178|gb|DN218151.1|DN218151
EST:     CTCTCCAGTATGGAGGAGGAGGCAGATAAGCTCAGTGGTTCTGCTGCAAG                         GCATGGAAAGGTCTATGTAACCATCGCAAAGAAGATTCTAGAGAAAGGCAA
genomic: CTCTCCAGTATGGAGGAGGAGGCAGATAAGCTCAGTGGTTCTGCTGCAAGgtaaactctt ... aataaatcagGCATGGAAAGGTCTATGTAACCATCGCAAAGAAGATTCTAGAGAAAGGCAA
EST: gi|32847429|gb|CD987110.1|CD987110
EST:     CTCTCCAGTATGGAGGAGGAGGCAGATAAGCTCAGTGGTTCTGCTGCAAG                         GCATGGAAAGGTCTATGTAACCATCGCAAAGAAGATTCTAGAGAAAGGCAA
genomic: CTCTCCAGTATGGAGGAGGAGGCAGATAAGCTCAGTGGTTCTGCTGCAAGgtaaactctt ... aataaatcagGCATGGAAAGGTCTATGTAACCATCGCAAAGAAGATTCTAGAGAAAGGCAA
EST: gi|32834519|gb|CD974197.1|CD974197
EST:     CTCTCCAGTATGGAGGAGGAGGCAGATAAGCTCAGTGGTTCTGCTGCAAG                         GCATGGAAAGGTCTATGTAACCATCGCAAAGAAGATTCTAGAGAAAGGCAA
genomic: CTCTCCAGTATGGAGGAGGAGGCAGATAAGCTCAGTGGTTCTGCTGCAAGgtaaactctt ... aataaatcagGCATGGAAAGGTCTATGTAACCATCGCAAAGAAGATTCTAGAGAAAGGCAA
EST: gi|32835606|gb|CD975284.1|CD975284
EST:     CTCTCCAGTATGGAGGAGGAGGCAGATAAGCTCAGTGGTTCTGCTGCAAG                         GCATGGAAAGGTCTATGTAACCATCGCAAAGAAGATTCTAGAGAAAGGCAA
genomic: CTCTCCAGTATGGAGGAGGAGGCAGATAAGCTCAGTGGTTCTGCTGCAAGgtaaactctt ... aataaatcagGCATGGAAAGGTCTATGTAACCATCGCAAAGAAGATTCTAGAGAAAGGCAA
EST: gi|71309002|gb|DR790766.1|DR790766
EST:     CTCTCCAGTATGGAGGAGGAGGCAGATAAGCTCAGTGGTTTTGCTGCAAG                         GCATGGAAAGGTCTATGTAACCATCGCAAAGAAGATTCTAGAGAAAGGCAA
genomic: CTCTCCAGTATGGAGGAGGAGGCAGATAAGCTCAGTGGTTCTGCTGCAAGgtaaactctt ... aataaatcagGCATGGAAAGGTCTATGTAACCATCGCAAAGAAGATTCTAGAGAAAGGCAA
EST: gi|109637370|gb|EC590915.1|EC590915
EST:     CTCTCCAGTATGGAGGAGGAGGCAGATAAGCTCAGTGGTTCTGCTGCAAG                         GCATGGAAAGGTCTATGTAACCATCGCAAAGAAGATTCTAGAGAAAGGCAA
genomic: CTCTCCAGTATGGAGGAGGAGGCAGATAAGCTCAGTGGTTCTGCTGCAAGgtaaactctt ... aataaatcagGCATGGAAAGGTCTATGTAACCATCGCAAAGAAGATTCTAGAGAAAGGCAA
EST: gi|6695734|gb|AW288812.1|AW288812
EST:     TTCTGCTGCAAG                         GCATGGAAAGGTCTATGTAACCATCGCAAAGAAGATTCTAGAGAAAGGCAA
genomic: TTCTGCTGCAAGgtaaactctt ... aataaatcagGCATGGAAAGGTCTATGTAACCATCGCAAAGAAGATTCTAGAGAAAGGCAA
EST: gi|71324808|gb|DR799110.1|DR799110
EST:     CTCTCCAGTATGGAGGAGGAGGCAGATAAGCTCAGTGGTTCTGCTGCAAG                         GCATGGAAAGGTCTATGTAACCATCGCAAAGAAGATTCTAGAGAAAGGCAA
genomic: CTCTCCAGTATGGAGGAGGAGGCAGATAAGCTCAGTGGTTCTGCTGCAAGgtaaactctt ... aataaatcagGCATGGAAAGGTCTATGTAACCATCGCAAAGAAGATTCTAGAGAAAGGCAA
EST: gi|37398024|gb|CF636321.1|CF636321
EST:     CTCTCCAGTATGGAGGAGGAGGCAGATAAGCTCAGTGGTTCTGCTGCAAG                         GCATGGAAAGGTCTATGTAACCATCGCAAAGAAGATTCTAGAGAAAGGCAA
genomic: CTCTCCAGTATGGAGGAGGAGGCAGATAAGCTCAGTGGTTCTGCTGCAAGgtaaactctt ... aataaatcagGCATGGAAAGGTCTATGTAACCATCGCAAAGAAGATTCTAGAGAAAGGCAA
EST: gi|32932741|gb|CF037553.1|CF037553
EST:     CTCTCCAGTATGGAGGAGGAGGCAGATAAGCTCAGTGGTTCTGCTGCAAG                         GCATGGAAAGGTCTATGTAACCATCGCAAAGAAGATTCTAGAGAAAGGCAA
genomic: CTCTCCAGTATGGAGGAGGAGGCAGATAAGCTCAGTGGTTCTGCTGCAAGgtaaactctt ... aataaatcagGCATGGAAAGGTCTATGTAACCATCGCAAAGAAGATTCTAGAGAAAGGCAA
EST: gi|78117469|gb|DV535856.1|DV535856
EST:     CTCTCCAGTATGGAGGAGGAGGCAGATAAGCTCAGTGGTTTTGCTGCAAG                         GCATGGAAAGGTCTATGTAACCATCGCAAAGAAGATTCTAGAGAAAGGCAA
genomic: CTCTCCAGTATGGAGGAGGAGGCAGATAAGCTCAGTGGTTCTGCTGCAAGgtaaactctt ... aataaatcagGCATGGAAAGGTCTATGTAACCATCGCAAAGAAGATTCTAGAGAAAGGCAA
EST: gi|33100651|gb|CF060611.1|CF060611
EST:     CTCTCCAGTATGGAGGAGGAGGCAGATAAGCTCAGTGGTTCTGCTGCAAG                         GCATGGAAAGGTCTATGTAACCATCGCAAAGAAGATTCTAGAGAAAGGCAA
genomic: CTCTCCAGTATGGAGGAGGAGGCAGATAAGCTCAGTGGTTCTGCTGCAAGgtaaactctt ... aataaatcagGCATGGAAAGGTCTATGTAACCATCGCAAAGAAGATTCTAGAGAAAGGCAA
EST: gi|71311893|gb|DR792421.1|DR792421
EST:     CTCTCCAGTATGGAGGAGGAGGCAGATAAGCTCAGTGGTTCTGCTGCAAG                         GCATGGAAAGGTCTATGTAACCATCGCAAAGAAGATTCTAGAGAAAGGCAA
genomic: CTCTCCAGTATGGAGGAGGAGGCAGATAAGCTCAGTGGTTCTGCTGCAAGgtaaactctt ... aataaatcagGCATGGAAAGGTCTATGTAACCATCGCAAAGAAGATTCTAGAGAAAGGCAA
EST: gi|33091740|gb|CF051734.1|CF051734
EST:     CTCTCCAGTATGGAGGAGGAGGCAGATAAGCTCAGTGGTTCTGCTGCAAG                         GCATGGAAAGGTCTATGTAACCATCGCAAAGAAGATTCTAGAGAAAGGCAA
genomic: CTCTCCAGTATGGAGGAGGAGGCAGATAAGCTCAGTGGTTCTGCTGCAAGgtaaactctt ... aataaatcagGCATGGAAAGGTCTATGTAACCATCGCAAAGAAGATTCTAGAGAAAGGCAA
EST: gi|211522923|gb|FL453798.1|FL453798
EST:     CTCTCCAGTATGGAGGAGGAGGCAGATAAGCTCAGTGGTTCTGCTGCAAG                         GCATGGAAAGGTCTATGTAACCATCGCAAAGAAGATTCTAGAGAAAGGCAA
genomic: CTCTCCAGTATGGAGGAGGAGGCAGATAAGCTCAGTGGTTCTGCTGCAAGgtaaactctt ... aataaatcagGCATGGAAAGGTCTATGTAACCATCGCAAAGAAGATTCTAGAGAAAGGCAA
EST: gi|32835628|gb|CD975306.1|CD975306
EST:     CTATCCAGTATGGAGGAGGAGGCAGATAAGCTCAGTGGTTCTGCTGCAAG                         GCATGGAAAGGTCTATGTAACCATCGCAAAGAAGATTCTAGAGAAAGGCAA
genomic: CTCTCCAGTATGGAGGAGGAGGCAGATAAGCTCAGTGGTTCTGCTGCAAGgtaaactctt ... aataaatcagGCATGGAAAGGTCTATGTAACCATCGCAAAGAAGATTCTAGAGAAAGGCAA
EST: gi|95107641|gb|EB739870.1|EB739870
EST:     CTCTCCAGTATGGAGGAGGAGGCAGATAAGCTCAGTGGTTCTGCTGCAAG                         GCATGGAAAGGTCTATGTAACCATCGCAAAGAAGATTCTAGAGAAAGGCAA
genomic: CTCTCCAGTATGGAGGAGGAGGCAGATAAGCTCAGTGGTTCTGCTGCAAGgtaaactctt ... aataaatcagGCATGGAAAGGTCTATGTAACCATCGCAAAGAAGATTCTAGAGAAAGGCAA
EST: gi|60357338|gb|DN224311.1|DN224311
EST:     CTCTCCAGTATGGAGGAGGAGGCAGATAAGCTCAGTGGTTCTGCTGCAAG                         GCATGGAAAGGTCTATGTAACCATCGCAAAGAAGATTCTAGAGAAAGGCAA
genomic: CTCTCCAGTATGGAGGAGGAGGCAGATAAGCTCAGTGGTTCTGCTGCAAGgtaaactctt ... aataaatcagGCATGGAAAGGTCTATGTAACCATCGCAAAGAAGATTCTAGAGAAAGGCAA
EST: gi|213192824|gb|FM186338.1|FM186338
EST:     CTCTCCAGTATGGAGGAGGAGGCAGATAAGCTCAGTGGTTCTGCTGCAAG                         GCATGGAAAGGTCTATGTAACCACCGCAAAGAAGATTCTAGAGAAAGGCAA
genomic: CTCTCCAGTATGGAGGAGGAGGCAGATAAGCTCAGTGGTTCTGCTGCAAGgtaaactctt ... aataaatcagGCATGGAAAGGTCTATGTAACCATCGCAAAGAAGATTCTAGAGAAAGGCAA
EST: gi|78118069|gb|DV536456.1|DV536456
EST:     CTCTCCAGTATGGAGGAGGAGGCAGATAAGCTCAGTGGTTTTGCTGCAAG                         GCATGGAAAGGTCTATGTAACCATCGCAAAGAAGATTCTAGAGAAAGGCAA
genomic: CTCTCCAGTATGGAGGAGGAGGCAGATAAGCTCAGTGGTTCTGCTGCAAGgtaaactctt ... aataaatcagGCATGGAAAGGTCTATGTAACCATCGCAAAGAAGATTCTAGAGAAAGGCAA
EST: gi|60349916|gb|DN216889.1|DN216889
EST:     CTCTCCAGTATGGAGGAGGAGGCAGATAAGCTCAGTGGTTCTGCTGCAAG                         GCATGGAAAGGTCTATGTAACCATCGCAAAGAAGATTCTAGAGAAAGGCAA
genomic: CTCTCCAGTATGGAGGAGGAGGCAGATAAGCTCAGTGGTTCTGCTGCAAGgtaaactctt ... aataaatcagGCATGGAAAGGTCTATGTAACCATCGCAAAGAAGATTCTAGAGAAAGGCAA
EST: gi|5915189|gb|AW052830.1|AW052830
EST:     CTCTCCAGTATGGAGGAGGAGGCAGATAAGCTCAGTGGTTCTGCTGCAAG                         GCATGGAAAGGTCTATGTAACCATCGCAAAGAAGATTCTAGAGAAAGGCAA
genomic: CTCTCCAGTATGGAGGAGGAGGCAGATAAGCTCAGTGGTTCTGCTGCAAGgtaaactctt ... aataaatcagGCATGGAAAGGTCTATGTAACCATCGCAAAGAAGATTCTAGAGAAAGGCAA
EST: gi|33101458|gb|CF061418.1|CF061418
EST:     CTCTCCAGTATGGAGGAGGAGGCAGATAAGCTCAGTGGTTCTGCTGCAAG                         GCATGGAAAGGTCTATGTAACCATCGCAAAGAAGATTCTAGAGAAAGGCAA
genomic: CTCTCCAGTATGGAGGAGGAGGCAGATAAGCTCAGTGGTTCTGCTGCAAGgtaaactctt ... aataaatcagGCATGGAAAGGTCTATGTAACCATCGCAAAGAAGATTCTAGAGAAAGGCAA
EST: gi|32848874|gb|CD988555.1|CD988555
EST:     CTCTCCAGTATGGAGGAGGAGGCAGATAAGCTCAGTGGTTCTGCTGCAAG                         GCATGGAAAGGTCTATGTAACCATCGCAAAGAAGATTCTAGAGAAAGGCAA
genomic: CTCTCCAGTATGGAGGAGGAGGCAGATAAGCTCAGTGGTTCTGCTGCAAGgtaaactctt ... aataaatcagGCATGGAAAGGTCTATGTAACCATCGCAAAGAAGATTCTAGAGAAAGGCAA
EST: gi|32835183|gb|CD974861.1|CD974861
EST:     CTCTCCAGTATGGAGGAGGAGGCAGATAAGCTCAGTGGTTCTGCTGCAAG                         GCATGGAAAGGTCTATGTAACCATCGCAAAGAAGATTCTAGAGAAAGGCAA
genomic: CTCTCCAGTATGGAGGAGGAGGCAGATAAGCTCAGTGGTTCTGCTGCAAGgtaaactctt ... aataaatcagGCATGGAAAGGTCTATGTAACCATCGCAAAGAAGATTCTAGAGAAAGGCAA
EST: gi|4874414|gb|AI673934.1|AI673934
EST:     CTCTCCAGTATGGAGGAGGAGGCAGATAAGCTCAGTGGTTCTGCTGCAAG                         GCATGGAAAGGTCTATGTAACCATCGCAAAGAAGATTCTAGAGAAAGGCAA
genomic: CTCTCCAGTATGGAGGAGGAGGCAGATAAGCTCAGTGGTTCTGCTGCAAGgtaaactctt ... aataaatcagGCATGGAAAGGTCTATGTAACCATCGCAAAGAAGATTCTAGAGAAAGGCAA
EST: gi|67024496|gb|CO453245.1|CO453245
EST:     CTCTCCAGTATGGAGGAGGAGGCAGATAAGCTCAGTGGTTCTGCTGCAAG                         GCATGGAAAGGTCTATGTAACCATCGCAAAGAAGATTCTAGAGAAAGGCAA
genomic: CTCTCCAGTATGGAGGAGGAGGCAGATAAGCTCAGTGGTTCTGCTGCAAGgtaaactctt ... aataaatcagGCATGGAAAGGTCTATGTAACCATCGCAAAGAAGATTCTAGAGAAAGGCAA
EST: gi|32847075|gb|CD986756.1|CD986756
EST:     CTCTCCAGTATGGAGGAGGAGGCAGATAAGCTCAGTGGTTCTGCTGCAAG                         GCATGGAAAGGTCTATGTAACCATCGCAAAGAAGATTCTAGAGAAAGGCAA
genomic: CTCTCCAGTATGGAGGAGGAGGCAGATAAGCTCAGTGGTTCTGCTGCAAGgtaaactctt ... aataaatcagGCATGGAAAGGTCTATGTAACCATCGCAAAGAAGATTCTAGAGAAAGGCAA
EST: gi|5152756|gb|AI759054.1|AI759054
EST:     CTCTCCAGTATGGAGGAGGAGGCAGATAAGCTCAGTGGTTCTGCTGCAAG                         GCATGGAAAGGTCTATGTAACCATCGCAAAGAAGATTCTAGAGAAAGGCAA
genomic: CTCTCCAGTATGGAGGAGGAGGCAGATAAGCTCAGTGGTTCTGCTGCAAGgtaaactctt ... aataaatcagGCATGGAAAGGTCTATGTAACCATCGCAAAGAAGATTCTAGAGAAAGGCAA
EST: gi|15208731|gb|BI430615.1|BI430615
EST:     CTCTCCAGTATGGAGGAGGAGGCAGATAAGCTCAGTGGTTCTGCTGCAAG                         GCATGGAAAGGTCTATGTAACCATCGCAAAGAAGATTCTAGAGAAAGGCAA
genomic: CTCTCCAGTATGGAGGAGGAGGCAGATAAGCTCAGTGGTTCTGCTGCAAGgtaaactctt ... aataaatcagGCATGGAAAGGTCTATGTAACCATCGCAAAGAAGATTCTAGAGAAAGGCAA
EST: gi|32832115|gb|CD971793.1|CD971793
EST:     CTCTCCAGTATGGAGGAGGAGGCAGATAAGCTCAGTGGTTCTGCTGCAAG                         GCATGGAAAGGTCTATGTAACCATCGCAAAGAAGATTCTAGAGAAAGGCAA
genomic: CTCTCCAGTATGGAGGAGGAGGCAGATAAGCTCAGTGGTTCTGCTGCAAGgtaaactctt ... aataaatcagGCATGGAAAGGTCTATGTAACCATCGCAAAGAAGATTCTAGAGAAAGGCAA
EST: gi|14206757|gb|BG840435.1|BG840435
EST:     CTCTCCAGTATGGAGGAGGAGGCAGATAAGCTCAGTGGTTCTGCTGCAAG                         GCATGGAAAGGTCTATGTAACCATCGCAAAGAAGATTCTAGAGAAAGGCAA
genomic: CTCTCCAGTATGGAGGAGGAGGCAGATAAGCTCAGTGGTTCTGCTGCAAGgtaaactctt ... aataaatcagGCATGGAAAGGTCTATGTAACCATCGCAAAGAAGATTCTAGAGAAAGGCAA
EST: gi|4646872|gb|AI621947.1|AI621947
EST:     CTCTCCAGTATGGAGGAGGAGGCAGATAAGCTCAGTGGTTCTGCTGCAAG                         GCATGGAAAGGTCTATGTAACCATCGCAAAGAAGAT
genomic: CTCTCCAGTATGGAGGAGGAGGCAGATAAGCTCAGTGGTTCTGCTGCAAGgtaaactctt ... aataaatcagGCATGGAAAGGTCTATGTAACCATCGCAAAGAAGAT
EST: gi|78125860|gb|DV544244.1|DV544244
EST:     CTCTCCAGTATGGAGGAGGAGGCAGATAAGCTCAGTGGTTTTGCTGCAAG                         GCATGGAAAGGTCTATGTAACCATCGCAAAGAAGATTCTAGAGAAAGGCAA
genomic: CTCTCCAGTATGGAGGAGGAGGCAGATAAGCTCAGTGGTTCTGCTGCAAGgtaaactctt ... aataaatcagGCATGGAAAGGTCTATGTAACCATCGCAAAGAAGATTCTAGAGAAAGGCAA
EST: gi|110518990|gb|EE023577.1|EE023577
EST:     CTCTCCAGTATGGAGGAGGAGGCAGATAAGCTCAGTGGTTTTGCTGCAAG                         GCATGGAAAGGTTTATGTAACCATCGCAAAGAAGATTTTAGAGAAAGGCAA
genomic: CTCTCCAGTATGGAGGAGGAGGCAGATAAGCTCAGTGGTTCTGCTGCAAGgtaaactctt ... aataaatcagGCATGGAAAGGTCTATGTAACCATCGCAAAGAAGATTCTAGAGAAAGGCAA
EST: gi|16925710|gb|BM078778.1|BM078778
EST:     AGGAGGCAGATAAGCTCAGTGGTTCTGCTGCAAG                         GCATGGAAAGGTCTATGTAACCATCGCAAAGAAGATTCTAGAGAAAGGCAA
genomic: AGGAGGCAGATAAGCTCAGTGGTTCTGCTGCAAGgtaaactctt ... aataaatcagGCATGGAAAGGTCTATGTAACCATCGCAAAGAAGATTCTAGAGAAAGGCAA
EST: gi|5713839|gb|AI943824.1|AI943824
EST:     CTTTCCAGTATGGAGGAGGAGGCAGATAAGCTCAGTGGTTTTGCTGCAAG                         GCATGGAAAGGTCTATGTAACCATCGCAAAGAAGATTCTAGAGAAAGGCAA
genomic: CTCTCCAGTATGGAGGAGGAGGCAGATAAGCTCAGTGGTTCTGCTGCAAGgtaaactctt ... aataaatcagGCATGGAAAGGTCTATGTAACCATCGCAAAGAAGATTCTAGAGAAAGGCAA
EST: gi|148936841|gb|EC880982.2|EC880982
EST:     CTCTCCAGTATGGAGGAGGAGGCAGATAAGCTCAGTGGTTCTGCTGCAAG                         GCATGGAAAGGTTTATGTAACCATCGCAAAGAAGATTTTAGAGAAAGGCAA
genomic: CTCTCCAGTATGGAGGAGGAGGCAGATAAGCTCAGTGGTTCTGCTGCAAGgtaaactctt ... aataaatcagGCATGGAAAGGTCTATGTAACCATCGCAAAGAAGATTCTAGAGAAAGGCAA
EST: gi|78021204|gb|DV489591.1|DV489591
EST:     CTCTCCAGTATGGAGGAGGAGGCAGATAAGCTCAGTGGTTCTGCTGCAAG                         GCATGGAAAGGTCTATGTAACCATCGCAAAGAAGATTCTAGAGAAAGGCAA
genomic: CTCTCCAGTATGGAGGAGGAGGCAGATAAGCTCAGTGGTTCTGCTGCAAGgtaaactctt ... aataaatcagGCATGGAAAGGTCTATGTAACCATCGCAAAGAAGATTCTAGAGAAAGGCAA
EST: gi|84908621|gb|DW404499.1|DW404499
EST:     CTCTCCAGTATGGAGGAGGAGGCAGATAAGCTCAGTGGTTCTGCTGCAAG                         GCATGGAAAGGTCTATGTAACCATCGCAAAGAAGATTCTAGAGAAAGGCAA
genomic: CTCTCCAGTATGGAGGAGGAGGCAGATAAGCTCAGTGGTTCTGCTGCAAGgtaaactctt ... aataaatcagGCATGGAAAGGTCTATGTAACCATCGCAAAGAAGATTCTAGAGAAAGGCAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCCTGGCTAAGGAGTTCCTTGGTGCTTCCGGTGACAAGCGAAAGGAAGTCCTCTCCAGTATGGAGGAGGAGGCAGATAAGCTCAGTGGTTCTGCTGCAAGgtaaactcttcccttagttattggcctatctgccttgagctattcattgatctcaattaacgttataagaatgttattagttaagtgagttgaattttccttattgcgtaataaatcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC