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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAAGATCGCCGACTTCAACCTCACCAACCAGGGCACCGACACAGCCGCGCGCTTGCACTCTACTCGTGTGCTGGGGACCTTTGGGTACCATGCTCCAGAgtaagatgaaggaacaatataataatatacacaaattgtgcaataaccactgcattgccttgcttttgtagctagcatttagccttcttaccatctgctactctggaccgttttctcag

Basic information

species Zea mays
transcript GRMZM2G127984_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G127984_T02 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os02g35760.2 (Oryza sativa), 5'ss of exon 5
CCAAGATCGCCGACTTCAACCTCACCAACCAGGGCACCGACACAGCCGCGCGCTTGCACTCTACTCGTGTGCTGGGGACCTTTGGGTACCATGCTCCAGAgtaagatgaaggaacaatataataatatacacaaattgtgcaataaccactgcattgccttgcttttgtagctagcatttagccttcttaccatctgctactctgg--accgtt-ttctcag
| ||||||||||| |||||||| || ||||||||||||||||| || || || ||||| || ||| | ||||| || || ||||| |||||||||||||||||||  ||  |||  || | ||  |   | |  ||    |  ||    | |||| || |||| |||      || ||||| | | || || || || |  ||||   |  ||  |  ||||
CGAAGATCGCCGATTTCAACCTGACGAACCAGGGCACCGACACCGCTGCCCGGTTGCATTCGACTAGGGTGCTAGGAACATTTGGATACCATGCTCCAGAgtaagg-gagagaatgat-tgat--ttctcgcgtatcagactgta----cagcat-gctttgccttttg---caggattta-cttgctgacgatttgttggtctgattatggtgatgttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76015507|gb|DT942677.1|DT942677
EST:     CGCTTGCACTCTACTCGTGTGCTGGGGACCTTTGGGTACCATGCTCCAGA                         ATACGCCATGACAGGCCAGATCAACCAGAAGAGCGACGTCTACAGTTTCGG
genomic: CGCTTGCACTCTACTCGTGTGCTGGGGACCTTTGGGTACCATGCTCCAGAgtaagatgaa ... gttttctcagATACGCCATGACAGGCCAGATCAACCAGAAGAGCGACGTCTACAGTTTCGG
EST: gi|86473195|gb|DY239565.1|DY239565
EST:     CGCTTGCACTCTACTCGTGTGCTGGGGACCTTTGGGTACCATGCTCCAGA                         ATACGCCATGACAGGCCAGATCAACCAGAAGAGCGACGTCTACAGTTTCGG
genomic: CGCTTGCACTCTACTCGTGTGCTGGGGACCTTTGGGTACCATGCTCCAGAgtaagatgaa ... gttttctcagATACGCCATGACAGGCCAGATCAACCAGAAGAGCGACGTCTACAGTTTCGG
EST: gi|62525897|gb|DN828545.1|DN828545
EST:     CGCTTGCACTCTACTCGTGTGCTGGGGACCTTTGGGTACCATGCTCCAGA                         ATACGCCATGACAGGCCAGATCAACCAGAAGAGCGACGTCTACAGTTTCGG
genomic: CGCTTGCACTCTACTCGTGTGCTGGGGACCTTTGGGTACCATGCTCCAGAgtaagatgaa ... gttttctcagATACGCCATGACAGGCCAGATCAACCAGAAGAGCGACGTCTACAGTTTCGG
EST: gi|47962209|gb|CN844918.1|CN844918
EST:     CGCTTGCACTCTACTCGTGTGCTGGGGACCTTTGGGTACCATGCTCCAGA                         ATACGCCATGACAGGCCAGATCAACCAGAAGAGCGACGTCTACAGTTTCGG
genomic: CGCTTGCACTCTACTCGTGTGCTGGGGACCTTTGGGTACCATGCTCCAGAgtaagatgaa ... gttttctcagATACGCCATGACAGGCCAGATCAACCAGAAGAGCGACGTCTACAGTTTCGG