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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGTATTTCCTGGAGCTCCTGGGGTACTGCTTGGAGGACGGCAACCGGATGGTAGCCTACCAGTTCGCCACGATGGGTTCCTTGCATAACATACTACACGgttggtagctctactagcttggcgatccacgcatctcttctgcgcggccggcaagtgaactgattctggcgttgtttggcag

Basic information

species Zea mays
transcript GRMZM2G127984_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G127984_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os02g35760.2 (Oryza sativa), 5'ss of exon 4
GAGTATTTCCTGGAGCTCCTGGGGTACTGCTTGGAGGACGGCAACCGGATGGTAGCCTACCAGTTCGCCACGATGGGTTCCTTGCATAACATACTACACGgttggtagctctactagcttggcgat--ccacgcatctcttctgcgcggccggcaagtgaactgattctggcgttgtttggcag----------------
||||| |||||||||||| |||| ||||||||||| ||||||||||| ||| | ||||||||||| || || |||||||| || || ||||| || ||||||    ||   |      ||  | |   ||     | | |  | |      |   ||  |||     | | | ||  |   |                  
GAGTACTTCCTGGAGCTCTTGGGCTACTGCTTGGAAGACGGCAACCGCATGCTGGCCTACCAGTTTGCAACCATGGGTTCTTTACACAACATTCTTCACGgtaataagtcttttccatttcactactaccttatgtttttcttacataatggaatagaaaaccatcccagtcattactcaacgaactacagccgattatt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76933556|gb|DV173494.1|DV173494
EST:     GGTAGCCTACCAGTTCGCCACGATGGGTTCCTTGCATAACATACTACACG                         GGAAGAAAGGAGTCCAGGGCGCGGAGCCCGGCCCCGTCCTCAACTGGGCTC
genomic: GGTAGCCTACCAGTTCGCCACGATGGGTTCCTTGCATAACATACTACACGgttggtagct ... tgtttggcagGGAAGAAAGGAGTCCAGGGCGCGGAGCCCGGCCCCGTCCTCAACTGGGCTC
EST: gi|89758846|gb|DY687874.1|DY687874
EST:     GGTAGCCTACCAGTTCGCCACGATGGGTTCCTTGCATAACATACTACACG                         GGAAGAAAGGAGTCCAGGGCGCGGAGCCCGGCCCCGTCCTCAACTGGGCTC
genomic: GGTAGCCTACCAGTTCGCCACGATGGGTTCCTTGCATAACATACTACACGgttggtagct ... tgtttggcagGGAAGAAAGGAGTCCAGGGCGCGGAGCCCGGCCCCGTCCTCAACTGGGCTC
EST: gi|76015508|gb|DT942678.1|DT942678
EST:     GGTAGCCTACCAGTTCGCCACGATGGGTTCCTTGCATAACATACTACACG                         GGAAGAAAGGAGTCCAGGGCGCGGAGCCCGGCCCCGTCCTCAACTGGGCTC
genomic: GGTAGCCTACCAGTTCGCCACGATGGGTTCCTTGCATAACATACTACACGgttggtagct ... tgtttggcagGGAAGAAAGGAGTCCAGGGCGCGGAGCCCGGCCCCGTCCTCAACTGGGCTC