Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGCGTCTACAACGCCACGCTCGGCGACGGCCGCGCCGCCGTCATCAAGAAGCTCGACACCAGCGCCTCGCAGGACTCCGACACCGACTTCTCCGCGCAGgtgcgtttcatagacacaaggataattataacaagcaagcaggcaaagtttccaattatttcacccattcctacag

Basic information

species Zea mays
transcript GRMZM2G127984_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G127984_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os02g35760.2 (Oryza sativa), 5'ss of exon 3
CCGCGTCTACAACGCCACGCTCGGCGACGGCCGCGCCGCCGTCATCAAGAAGCTCGACACCAGCGCCTCGCAGGACTCCGACACCGACTTCTCCGCGCAGgtgcgtttcatagacacaaggataattataa-----caagcaagc-aggcaaagtttccaattatttcacccattcctacag-----------
|||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| || ||||||| |||||  ||||| |||| |||||||| |||||| |   || | ||||     |  || |       |   |  || |    |    ||  |   |||  | |||    |              
CCGCGTCTACAACGGCACGCTCAGCGACGGCCGCGCCGCCGTCATCAAGAAGCTCGACCCCGGCGCCTCCCAGGAGACCGACTCCGAGTTCTCCGCCCAGgtgtgcccca-aaacaccccacttcttcttcttcctcctcctcgcgacatgagccatcttagctttttgctcatcttcatctcgtcgccatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76933556|gb|DV173494.1|DV173494
EST:     AGCTCGACACCAGCGCCTCGCAGGACTCCGACACCGACTTCTCCGCGCAG                         ATAGCCATGGTCTCCAAGCTCAAGAACGAGTATTTCCTGGAGCTCCTGGGG
genomic: AGCTCGACACCAGCGCCTCGCAGGACTCCGACACCGACTTCTCCGCGCAGgtgcgtttca ... attcctacagATAGCCATGGTCTCCAAGCTCAAGAACGAGTATTTCCTGGAGCTCCTGGGG
EST: gi|89758846|gb|DY687874.1|DY687874
EST:     AGCTCGACACCAGCGCCTCGCAGGACTCCGACACCGACTTCTCCGCGCAG                         ATAGCCATGGTCTCCAAGCTCAAGAACGAGTATTTCCTGGAGCTCCTGGGG
genomic: AGCTCGACACCAGCGCCTCGCAGGACTCCGACACCGACTTCTCCGCGCAGgtgcgtttca ... attcctacagATAGCCATGGTCTCCAAGCTCAAGAACGAGTATTTCCTGGAGCTCCTGGGG
EST: gi|76015508|gb|DT942678.1|DT942678
EST:     AGCTCGACACCAGCGCCTCGCAGGACTCCGACACCGACTTCTCCGCGCAG                         ATAGCCATGGTCTCCAAGCTCAAGAACGAGTATTTCCTGGAGCTCCTGGGG
genomic: AGCTCGACACCAGCGCCTCGCAGGACTCCGACACCGACTTCTCCGCGCAGgtgcgtttca ... attcctacagATAGCCATGGTCTCCAAGCTCAAGAACGAGTATTTCCTGGAGCTCCTGGGG