1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gttggtagctctactagcttggcgatccacgcatctcttctgcgcggccggcaagtgaactgattctggcgttgtttggcagGGAAGAAAGGAGTCCAGGGCGCGGAGCCCGGCCCCGTCCTCAACTGGGCTCAGCGCGTGAAGATAGCCTACGGAGCCGCGAGAGGTCTGGAGTACCTGCA
species | Zea mays |
transcript | GRMZM2G127984_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GGTAGCCTACCAGTTCGCCACGATGGGTTCCTTGCATAACATACTACACG GGAAGAAAGGAGTCCAGGGCGCGGAGCCCGGCCCCGTCCTCAACTGGGCTCEST: gi|89758846|gb|DY687874.1|DY687874
genomic: GGTAGCCTACCAGTTCGCCACGATGGGTTCCTTGCATAACATACTACACGgttggtagct ... tgtttggcagGGAAGAAAGGAGTCCAGGGCGCGGAGCCCGGCCCCGTCCTCAACTGGGCTC
EST: GGTAGCCTACCAGTTCGCCACGATGGGTTCCTTGCATAACATACTACACG GGAAGAAAGGAGTCCAGGGCGCGGAGCCCGGCCCCGTCCTCAACTGGGCTCEST: gi|76015508|gb|DT942678.1|DT942678
genomic: GGTAGCCTACCAGTTCGCCACGATGGGTTCCTTGCATAACATACTACACGgttggtagct ... tgtttggcagGGAAGAAAGGAGTCCAGGGCGCGGAGCCCGGCCCCGTCCTCAACTGGGCTC
EST: GGTAGCCTACCAGTTCGCCACGATGGGTTCCTTGCATAACATACTACACG GGAAGAAAGGAGTCCAGGGCGCGGAGCCCGGCCCCGTCCTCAACTGGGCTC
genomic: GGTAGCCTACCAGTTCGCCACGATGGGTTCCTTGCATAACATACTACACGgttggtagct ... tgtttggcagGGAAGAAAGGAGTCCAGGGCGCGGAGCCCGGCCCCGTCCTCAACTGGGCTC
cacgcatctcttctgcgcggccggcaagtgaactgattctggcgttgtttggcagGGAAGAAAGGAGTCCAGGGCGCGGAGCCCGGCCCCGTCCTCAACTGGGCTCAGCGCGTGAAGATAGCCTACGGAGCCGCGAGAGGTCTGGAGTACCTGCA
aactgat putative branch site (score: 3)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttggtagctctactagcttggcgatccacgcatctcttctgcgcggccggcaagtgaactgattctggcgttgtttggcagGGAAGAAAGGAGTCCAGGGCGCGGAGCCCGGCCCCGTCCTCAACTGGGCTCAGCGCGTGAAGATAGCCTACGGAGCCGCGAGAGGTCTGGAGTACCTGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG