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...ctgaacatgttaaaaacaactggtatagggtgtcagattcgaacttttttaaggcaagaataccgatgaaatcctgaatattgatcttcctttcttgaagGTACCGCATACAAAGTGATCGTAGAGCTGCTATCTGCAGTGTACACCCAACAGAACAAGCAACACTTCAGTGCATAGGGTGTCTGAAGTCAAAAATACCT
species | Zea mays |
transcript | GRMZM2G124051_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GACGTGTCTGAGACCGCGCCCGTGGATGGGTACTTCATGCGCTACAAGTG GTACCGCATACAAAGTGATCGTAGAGCTGCTATCTGCAGTGTACACCCAACEST: gi|149039469|gb|EE046609.2|EE046609
genomic: GACGTGTCTGAGACCGCGCCCGTGGATGGGTACTTCATGCGCTACAAGTGgtgagcagtc ... tttcttgaagGTACCGCATACAAAGTGATCGTAGAGCTGCTATCTGCAGTGTACACCCAAC
EST: GACGTGTCTGAGACCGCGCCCGTGGATGGGTACTTCATGCGCTACAAGTG GTACCGCATACAAAGTGATCGTAGAGCTGCTATCTGCAGTGTACACCCAACEST: gi|211532376|gb|FL244241.1|FL244241
genomic: GACGTGTCTGAGACCGCGCCCGTGGATGGGTACTTCATGCGCTACAAGTGgtgagcagtc ... tttcttgaagGTACCGCATACAAAGTGATCGTAGAGCTGCTATCTGCAGTGTACACCCAAC
EST: GACGTGTCTGAGACCGCGCCCGTGGATGGGTACTTCATGCGCTACAAGTG GTACCGCATACAAAGTGATCGTAGAGCTGCTATCTGCAGTGTACACCCGACEST: gi|211532377|gb|FL244242.1|FL244242
genomic: GACGTGTCTGAGACCGCGCCCGTGGATGGGTACTTCATGCGCTACAAGTGgtgagcagtc ... tttcttgaagGTACCGCATACAAAGTGATCGTAGAGCTGCTATCTGCAGTGTACACCCAAC
EST: GACGTGTCTGAGACCGCGCCCGTGGATGGGTACTTCATGCGCTACAAGTG GTACCGCATACAAAGTGATCGTAGAGCTGCTATCTGCAGTGTACACCCCACEST: gi|148947123|gb|EC892433.2|EC892433
genomic: GACGTGTCTGAGACCGCGCCCGTGGATGGGTACTTCATGCGCTACAAGTGgtgagcagtc ... tttcttgaagGTACCGCATACAAAGTGATCGTAGAGCTGCTATCTGCAGTGTACACCCAAC
EST: GACGTGTCTGAGACCGCGCCCGTGGATGGGTACTTCATGCGCTACAAGTG GTACCGCATACAAAGTGATCGTAGAGCTGCTATCTGCAGTGTACACCCAACEST: gi|211532380|gb|FL244245.1|FL244245
genomic: GACGTGTCTGAGACCGCGCCCGTGGATGGGTACTTCATGCGCTACAAGTGgtgagcagtc ... tttcttgaagGTACCGCATACAAAGTGATCGTAGAGCTGCTATCTGCAGTGTACACCCAAC
EST: ACGTGTCTGAGAC-GCGNCCCGTGGATGGGTACTTCATGCGCTACAAGTG G-ACCGCATACNAAGTGATCGTAGAGCTGCTATCTGCAGTGTACACCCAACEST: gi|211532373|gb|FL244238.1|FL244238
genomic: ACGTGTCTGAGACCGCG-CCCGTGGATGGGTACTTCATGCGCTACAAGTGgtgagcagtc ... tttcttgaagGTACCGCATACAAAGTGATCGTAGAGCTGCTATCTGCAGTGTACACCCAAC
EST: ACGTGTCTGAGACCG-GNCCCGTGGATGGGTACTTCATGCGCTACAAGTG GTACCGCATACAAAGTGATCGTAGAGCTGCTATCTGCAGTGTACACCCAACEST: gi|211532371|gb|FL244236.1|FL244236
genomic: ACGTGTCTGAGACCGCG-CCCGTGGATGGGTACTTCATGCGCTACAAGTGgtgagcagtc ... tttcttgaagGTACCGCATACAAAGTGATCGTAGAGCTGCTATCTGCAGTGTACACCCAAC
EST: GACGTGTCTGAGACCGCGCCCGTGGATGGGTACTTCATGCGCTACAAGTG GTACCGCATACAAAGTGATCGTAGAGCTGCTATCTGCAGTGTACACCCAACEST: gi|149078953|gb|EE167793.2|EE167793
genomic: GACGTGTCTGAGACCGCGCCCGTGGATGGGTACTTCATGCGCTACAAGTGgtgagcagtc ... tttcttgaagGTACCGCATACAAAGTGATCGTAGAGCTGCTATCTGCAGTGTACACCCAAC
EST: GACGTGTCTGAGACCGCGCCCGTGGATGGGTACTTCATGCGCTACAAGTG GTACCGCATACAAAGTGATCGTAGAGCTGCTATCTGCAGTGGACACCCAACEST: gi|149082745|gb|EE171964.2|EE171964
genomic: GACGTGTCTGAGACCGCGCCCGTGGATGGGTACTTCATGCGCTACAAGTGgtgagcagtc ... tttcttgaagGTACCGCATACAAAGTGATCGTAGAGCTGCTATCTGCAGTGTACACCCAAC
EST: GACGTGTCTGAGACCGCGCCCGTGGATGGGTACTTCATGCGCTACAAGTG GTACCGCATACAAAGTGATCGTAGAGCTGCTATCTGCAGTGTACACCCAACEST: gi|211532375|gb|FL244240.1|FL244240
genomic: GACGTGTCTGAGACCGCGCCCGTGGATGGGTACTTCATGCGCTACAAGTGgtgagcagtc ... tttcttgaagGTACCGCATACAAAGTGATCGTAGAGCTGCTATCTGCAGTGTACACCCAAC
EST: GTGTCTGAGACCGCGCCNNCGTGGATGGGTACTTCATGGCGCTACAAGTG GTACCGCNATACAAAGTGANTCGTAGAGCTGCTAATCTGCAGTGTACACCC
genomic: GTGTCTGAGACCGCGCC--CGTGGATGGGTACTTCATG-CGCTACAAGTGgtgagcagtc ... tttcttgaagGTACCGC-ATACAAAGTGA-TCGTAGAGCTGCTA-TCTGCAGTGTACACCC
tttttaaggcaagaataccgatgaaatcctgaatattgatcttcctttcttgaagGTACCGCATACAAAGTGATCGTAGAGCTGCTATCTGCAGTGTACACCCAACAGAACAAGCAACACTTCAGTGCATAGGGTGTCTGAAGTCAAAAATACCT
tattgat putative branch site (score: 53)
ttgatcttcctttctt CT-rich tract
aatattgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgaacatgttaaaaacaactggtatagggtgtcagattcgaacttttttaaggcaagaataccgatgaaatcctgaatattgatcttcctttcttgaagGTACCGCATACAAAGTGATCGTAGAGCTGCTATCTGCAGTGTACACCCAACAGAACAAGCAACACTTCAGTGCATAGGGTGTCTGAAGTCAAAAATACCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- gaacatg
- - - - - -aaaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - -aagaatac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctgaat