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...tgcatgatctgctagaaattgtgctagtatatgtgcccatgtattgaccctgatgatgttaccatctatatctcatatcatactcgtttgtgtttgccagGAGGAGCTGTAGGGGAGGGATTCTTGACAATCGCATGAGATGATGAGAATGTACCCTGGCGAAGGCAGGAACGAGAAGCCTAAGGGAAAGAGGCTTGTTA
species | Zea mays |
transcript | GRMZM2G124051_T01 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: CTCCTAGCAGAATTCCGGTGCAAGCTTAGAGTTAGACGATGATACTTTAG GAGGAGCTGTAGGGGAGGGATTCTTGACAATCGCATGAGATGATGAGAATGEST: gi|24767403|gb|CA402546.1|CA402546
genomic: CTCCTAGCAGAATTCCGGTGCAAGCTTAGAGTTAGACGATGATACTTTAGgtatggggag ... tgtttgccagGAGGAGCTGTAGGGGAGGGATTCTTGACAATCGCATGAGATGATGAGAATG
EST: CTCCTAGCAGAATTCCGGTGCAAGCTTAGAGTTAGACGATGATACTTTAG GAGGAGCTGTAGGGGAGGGATTCTTGACAATCGCATGAGATGATCAGAATG
genomic: CTCCTAGCAGAATTCCGGTGCAAGCTTAGAGTTAGACGATGATACTTTAGgtatggggag ... tgtttgccagGAGGAGCTGTAGGGGAGGGATTCTTGACAATCGCATGAGATGATGAGAATG
gaccctgatgatgttaccatctatatctcatatcatactcgtttgtgtttgccagGAGGAGCTGTAGGGGAGGGATTCTTGACAATCGCATGAGATGATGAGAATGTACCCTGGCGAAGGCAGGAACGAGAAGCCTAAGGGAAAGAGGCTTGTTA
atctatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcatgatctgctagaaattgtgctagtatatgtgcccatgtattgaccctgatgatgttaccatctatatctcatatcatactcgtttgtgtttgccagGAGGAGCTGTAGGGGAGGGATTCTTGACAATCGCATGAGATGATGAGAATGTACCCTGGCGAAGGCAGGAACGAGAAGCCTAAGGGAAAGAGGCTTGTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
tgcatga
- - - - ctgctag
- - - - - - - - - -tgtgcta
- - - - - - - - - - - - - - -tatgtgc
- - - - - - - - - - - - - - - - - - -catgtat
- - - - - - - - - - - - - - - - - - - - - - - - cctgatg