1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ggaactttttttttgagtcccaatcatttttcaccatgtttgtgcttggtatgttatttgttttccacaaatattttgatggctaagttttgccttgtagACTGTTCGGTTCAAGAATGAGCTGGAACGTAACATTACTATAAAGCTGGGCTATGCTAATGCAAAAATCTACAAATGTGAGGATGACAGATGTCCACGAC
species | Zea mays |
transcript | GRMZM2G117900_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATGTGGCTCATGGAAAGTCTACTGTTGTGAAGGCTATATCCGGAGTTCAG ACTGTTCGGTTCAAGAATGAGCTGGAACGTAACATTACTATAAAGCTGGGCEST: gi|32944740|gb|CF049559.1|CF049559
genomic: ATGTGGCTCATGGAAAGTCTACTGTTGTGAAGGCTATATCCGGAGTTCAGgtgtgattca ... tgccttgtagACTGTTCGGTTCAAGAATGAGCTGGAACGTAACATTACTATAAAGCTGGGC
EST: ATGTGGCTCATGGAAAGTCTACTGTTGTGAAGGCTATATCCGGAGTTCAG ACTGTTCGGTTCAAGAATGAGCTGGAACGTAACATTACTATAAAGCTGGGCEST: gi|148932915|gb|EE285716.2|EE285716
genomic: ATGTGGCTCATGGAAAGTCTACTGTTGTGAAGGCTATATCCGGAGTTCAGgtgtgattca ... tgccttgtagACTGTTCGGTTCAAGAATGAGCTGGAACGTAACATTACTATAAAGCTGGGC
EST: ATGTGGCTCATGGAAAGTCTACTGTTGTGAAGGCTATATCCGGAGTTCAG ACTGTTCGGTTCAAGAATGAGCTGGAACGTAACATTACTATAAAGCTGGGCEST: gi|32945952|gb|CF050771.1|CF050771
genomic: ATGTGGCTCATGGAAAGTCTACTGTTGTGAAGGCTATATCCGGAGTTCAGgtgtgattca ... tgccttgtagACTGTTCGGTTCAAGAATGAGCTGGAACGTAACATTACTATAAAGCTGGGC
EST: ATGTGGCTCATGGAAAGTCTACTGTTGTGAAGGCTATATCCGGAGTTCAG ACTGTTCGGTTCAAGAATGAGTTGTTTTTTAACATTACTATAAAGCTGGGCEST: gi|148952113|gb|EC897906.2|EC897906
genomic: ATGTGGCTCATGGAAAGTCTACTGTTGTGAAGGCTATATCCGGAGTTCAGgtgtgattca ... tgccttgtagACTGTTCGGTTCAAGAATGAGCTGGAACGTAACATTACTATAAAGCTGGGC
EST: ATGTGGCTCATGGAAAGTCTACTGTTGTGAAGGCTATATCCGGAGTTCAG ACTGTTCGGTTCAAGAATGAGCTGGAACGTAACATTACTATAAAGCTGGGC
genomic: ATGTGGCTCATGGAAAGTCTACTGTTGTGAAGGCTATATCCGGAGTTCAGgtgtgattca ... tgccttgtagACTGTTCGGTTCAAGAATGAGCTGGAACGTAACATTACTATAAAGCTGGGC
ttggtatgttatttgttttccacaaatattttgatggctaagttttgccttgtagACTGTTCGGTTCAAGAATGAGCTGGAACGTAACATTACTATAAAGCTGGGCTATGCTAATGCAAAAATCTACAAATGTGAGGATGACAGATGTCCACGAC
ttttgat putative branch site (score: 4)
ttttgcctt putative PPT
atgttatttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggaactttttttttgagtcccaatcatttttcaccatgtttgtgcttggtatgttatttgttttccacaaatattttgatggctaagttttgccttgtagACTGTTCGGTTCAAGAATGAGCTGGAACGTAACATTACTATAAAGCTGGGCTATGCTAATGCAAAAATCTACAAATGTGAGGATGACAGATGTCCACGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - -ccaatca
- - - - - - - - - - - - - - - - - catgttt
- - - - - - - - - - - - - - - - - - - - - tgcttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttgatg