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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCCACTAGCGACGACTGGGCGACCTCCGCCGCCACACTAAACCCTACTCCAGGTGCCCAGGTCTGCGTCGGGCCCTTGCCGGCGACGAGCACCCGCTAGgtatgtctatcccgtctcttcccttggtgctgcgcgaaaccgagcacccaaaccctaactcaagttatctggttatttgtgttcggatctgacctaatac...

Basic information

species Zea mays
transcript GRMZM2G117900_T02
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148932915|gb|EE285716.2|EE285716
EST:     CAGGTGCCCAGGTCTGCGTCGGGCCCTTGCCGGCGACGAGCACCCGCTAGTTACCACTGTGCGG            
genomic: CAGGTGCCCAGGTCTGCGTCGGGCCCTTGCCGGCGACGAGCACCCGC----T---A-------Ggtatgtctat .
EST: gi|148952113|gb|EC897906.2|EC897906
EST:     CAGGTGCCCAGGTCTGCGTCGGGCCCTTGCCGGCGACGAGCACCCGCTAGTTACCACTGTGCGG            
genomic: CAGGTGCCCAGGTCTGCGTCGGGCCCTTGCCGGCGACGAGCACCCGC----T---A-------Ggtatgtctat .