Sequence
atgc intronic sequence ATGC exonic sequenceTTTCATTCCAACTTTATGACCTCAAGCAACAAGGCTTCATTGAAAGACAGGAGgtatttaactaatctatgtgctgtgttggaacttagcatgtttgtagggttatatggttttgtttttaacaaatattttacaatcctgatactggctggt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G112672_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os03g42840.1 (Oryza sativa), 5'ss of exon 5
TTTCATTCCAACTTTATGACCTCAAGCAACAAGGCTTCATTGAAAGACAGGAGgtatttaactaatctatgtgctgtgttggaacttagcatgtttgtagg-gttatatggttttgtt-tttaacaaatattttacaatcctgatactggctggt
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TTTCTTTCCAGCTATATGACCTCAAGCAACAAGGGTTCATTGAAAGACAAGAGgtacttctctaatcagcatgttatgtttctctcataaaagtcagcatgtagtatgtgtgaaggtaactttacaattagagtaaatttc--atattggaccat
upper sequence: GRMZM2G112672_T01 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA07G39940.1 (Glycine max), 5'ss of exon 6
TTTCATTCCAACTTTATGACCTCAAGCAACAAGGCTTCATTGAAAGACAGGAGgtatttaactaatctatgtgctgtgttggaacttagcatgtttgtagg-gttatatggttttgtttttaacaaatattttacaatcctgatactggctggt
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TTTCATTCCAATTGTATGATCTCAAACAACAAGGTTTTATTGAAAGACAGGAGgtaattttcttttct-tgtgatgttgaataaatcaagttttgtccacccaccatgtaggactactttttgactttgtttgggtctccttacaaccaatgag
upper sequence: GRMZM2G112672_T01 (Zea mays), 5'ss of exon 5
lower sequence: Vv00s1569g00020.t01 (Vitis vinifera), 5'ss of exon 5
TTTCATTCCAACTTTATGACCTCAAGCAACAAGGCTTCATTGAAAGACAGGAGgtatttaactaatctatgtgctgtgttg-gaacttagcatgtttgtagggttatatggttttgtttttaacaaatattttacaatcc-tgatactggctggt
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TTTCATTTCAACTGTATGATCTAAAGCAACAAGGGTTCATTGAAAGACAGGAGgtgccca-ttttttttcctcttgtaaagcaaatccattgaagttgtcaatatacaattatttatgaattatgtatttactattgtctataatattg-ccagtMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|83279282|gb|DV943290.1|DV943290EST: CATTCCAACTTTATGACCTCAAGCAACAAGGCTTCATTGAAAGACAGGAG ACTTTTGAGGAGGCAGACACAAAGCATGATGGGAAAATTGACAAAGAAGAA
genomic: CATTCCAACTTTATGACCTCAAGCAACAAGGCTTCATTGAAAGACAGGAGgtatttaact ... tttctaaaagACTTTTGAGGAGGCAGACACAAAGCATGATGGGAAAATTGACAAAGAAGAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTTCATTCCAACTTTATGACCTCAAGCAACAAGGCTTCATTGAAAGACAGGAGgtatttaactaatctatgtgctgtgttggaacttagcatgtttgtagggttatatggttttgtttttaacaaatattttacaatcctgatactggctggt
- - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacaaata