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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGAAGCAGCTCCTTGCCGTGCTCCTCAAGTGCTGCCACATCGACCTCAAGCAGCCCAACGGCCTAGATGATCCGGAGGTGCTCGCTAGGGAGACCGTGTgtacgtccaagccgcttccccgtttccgttgtctccttcaattcttcgtccgtagtaccgtgatcgattgtcttccgtttgtcttactgcctcgtctgcgtctaaaactttacctgcag

Basic information

species Zea mays
transcript GRMZM2G112672_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G112672_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os03g42840.1 (Oryza sativa), 5'ss of exon 1
GTGAAGCAGCTCCTTGCCGTGCTCCTCAAGTGCTGCCACATCGACCTCAAGCAGCCCAACGGCCTAGATGATCCGGAGGTGCTCGCTAGGGAGACCGTGTgtacgtccaagc-cgcttccccgtttcc----gttgtctccttcaatt----cttcgtccgtagtaccgtgatcgattgtcttccgtttgtcttac-tgcctcgtctgcgtctaaaact--ttacctgcag--------------
||||||||||||   | |||||| |||||||||||| || ||||||||||||||||||| || || || ||||| ||  | ||||| ||||||||||| |||||||||   | | ||  | || || |    |  || | ||| | |      |   ||  | | || |  ||  ||||| |||| ||| | || |  | | | | ||    |     |  |   ||||                
GTGAAGCAGCTCTGCGGCGTGCTACTCAAGTGCTGCGACCTCGACCTCAAGCAGCCCAAGGGGCTCGAGGATCCCGAAATCCTCGCCAGGGAGACCGTCTgtacgtcctctctctctctctcgcttgctcgtgcagtgtacttgagtgtcgattgtttcacttgaactgaaattaattgtgttccctttttgtttcgcggcgcatgtggcattgggggtggtggtctgctcgtttgtgcgtgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5325037|gb|AI783228.1|AI783228
EST:     GCTAGGGAGACCGTGT                         TTAGCGTGAGCGAGGTCGAGGCATTGTATGAGCTGTTCAAGAAGATCAGCA
genomic: GCTAGGGAGACCGTGTgtacgtccaa ... ttacctgcagTTAGCGTGAGCGAGGTCGAGGCATTGTATGAACTGTTCAAGAAGATCAGCA