Sequence
atgc intronic sequence ATGC exonic sequenceGAGGAGTTTCAGCTGGCGCTGTTCAAGACTAATAAGAAGGAAAGTTTGTTTGCTGATCGGgtaaggctactttgcatactgtttctgttatgctctttgtactttgtagttgtccaatgaaaaatattgtagcactattagtagtattcagtcatgatca...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G112672_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os03g42840.1 (Oryza sativa), 5'ss of exon 3
GAGGAGTTTCAGCTGGCGCTGTTCAAGACTAATAAGAAGGAAAGTTTGTTTGCTGATCGGgtaaggctactttgcatactgtttctgttatgctctttgtactttgtagttgtcca-atgaaaaatattgtagcactattagtagtattcagtcatgatca
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GAGGAGTTTCAGTTGGCGCTGTTCAAGACCAACAAGAAGGAGAGTTTATTTGCTGACCGTgtaagaccaacaataatataacttgcctaccatggaaaatatcctgtaactgtctacatttgaagtgaaatca-attatgaaattagtttggttatgctct
upper sequence: GRMZM2G112672_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA18G08230.1 (Glycine max), 5'ss of exon 5
GAGGAGTTTCAGCTGGCGCTGTTCAAGACTAATAAGAAGGAAAGTTTGTTTGCTGATCGGgtaaggctact-ttgcatactgtt-tctgttatgc---tctttgtactttgtagttgtccaatgaaaaatattgtagcactattag--tagtattcagtcatgatca
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-AAGAGTTTCAGTTGGCATTGTTCAAGACAAATAAAAAAGAAAGTCTGTTTGCTGATCGGGtattgctttcatttctttttattgttttttatgcaaatatttttaccttgaagcatgaaaatctct--ttccatggtcctatcaggttaatatccacacaga----
upper sequence: GRMZM2G112672_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA08G44580.1 (Glycine max), 5'ss of exon 4
GAGGAGTTTCAGCTGGCGCTGTTCAAGACTAATAAGAAGGAAAGTTTGTTTGCTGATCGGgtaaggctactttgcatactgtttctgttatgctctttgtactttgtagttgtccaatgaaaaatattgtagcactattagtagtattcagt-catgatca-
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GAAGAGTTTCAGTTGGCTTTGTTCAAGACAAATAAAAAAGAAAGTCTGTTTGCTGATCGGgtattgct--tttgtttctttttattgtttttttatgcaaatatctttaccttgaagcatgaaaatctctttcattggtcataaaaaagaaagtctgtttgc
upper sequence: GRMZM2G112672_T01 (Zea mays), 5'ss of exon 3
lower sequence: AT5G55990.1 (Arabidopsis thaliana), 5'ss of exon 5
GAGGAGTTTCAGCTGGCGCTGTTCAAGACTAATAAGAAGGAAAGTTTGTTTGCTGATCGGgtaaggctactttgcatactgtttctgttatgctctttgtactttgtagttgtccaatgaaaaatattgtagcactattagtagtattcagtcatgatca---
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GAAGAGTTTCAGTTGGCTTTGTTTAAGACAAATAAAAAAGAGAGTTTGTTTGCAGATCGGgtaatgtttctttcttcacattataag---tgttctta--aacccatttttgtc-aagatcaagtttagaagaaatgct-gaaatatgtgattttgtttctagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|5325037|gb|AI783228.1|AI783228EST: AGTTGGCGCTGTTCAAGACTAATAAGAAGGAAAGTTTGTTTGCTGATCGG GTATTTGACTTATTTGATACAAAACACAATGGGATTCTTGGATTTGAAGAA
genomic: AGCTGGCGCTGTTCAAGACTAATAAGAAGGAAAGTTTGTTTGCTGATCGGgtaaggctac ... gttcttgcagGTATTTGACTTATTTGATACAAAACACAATGGGATTCTTGGATTTGAAGAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAGGAGTTTCAGCTGGCGCTGTTCAAGACTAATAAGAAGGAAAGTTTGTTTGCTGATCGGgtaaggctactttgcatactgtttctgttatgctctttgtactttgtagttgtccaatgaaaaatattgtagcactattagtagtattcagtcatgatca
- - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgaaaaa