Sequence
atgc intronic sequence ATGC exonic sequenceTTATTTGATACAAAACACAATGGGATTCTTGGATTTGAAGAATTTGCTCGGGCGCTCTCAGTATTTCATCCCAATGCTCCCTTGGATGAGAAGATCGAGTgtaagtttgtgatacttagggcatgtgcacagtttgtttgattccaaaataaggcatgtacataacggcagattatgttgatgtggtcaagatgaatagt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G112672_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os03g42840.1 (Oryza sativa), 5'ss of exon 4
TTATTTGATACAAAACACAATGGGATTCTTGGATTTGAAGAATTTGCTCGGGCGCTCTCAGTATTTCATCCCAATGCTCCCTTGGATGAGAAGATCGAGTgtaagtttgtgatacttagggcatgtgcacagtttgtttgattccaaaataaggcatgtacataac--ggcagattatgttgatgtggtcaagatgaatagt------
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TTGTTCGATACAAAACACAATGGTATTTTAGGATTCGAAGAATTTGCCCGTGCGCTCTCAGTATTTCATCCAAATGCACCTCTCGACGAGAAAATTGACTgtaagtgta--------aatgcatctgggtgggtagcttaactacaaaatatagcgccttactgatagggaagtctataacctaaaaatagaaaaggacacatctatg
upper sequence: GRMZM2G112672_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA08G44580.1 (Glycine max), 5'ss of exon 5
TTATTTGATACAAAACACAATGGGATTCTTGGATTTGAAGAATTTGCTCGGGCGCTCTCAGTATTTCATCCCAATGCTCCCTTGGATGAGAAGATCGAGTgtaagtt-tgtgatacttagggcat-------------gtgcacagtttgtttg---attccaaaataaggcatgtacataacgg------cagattatgttgatg--tggtcaagatgaatagt-----------------------------
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TTATTTGACACAAAACACAATGGGATACTGGGTTTTGAAGAGTTTGCTCGTGCTCTCTCCGTTTTCCATCCTAATGCCCCCATTGATGATAAGATCGAATgtatgttgtacaatattttttctacaattattattttagcatacagattttctgtaaatttaataacaatgcacaattgaaatcaagtctttaattttctttgataacctttttaaataaacaaaaattgaacccatgtgatatcatgtttcag
upper sequence: GRMZM2G112672_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA17G00830.1 (Glycine max), 5'ss of exon 5
TTATTTGATACAAAACACAATGGGATTCTTGGATTTGAAGAATTTGCTCGGGCGCTCTCAGTATTTCATCCCAATGCTCCCTTGGATGAGAAGATCGAGTgtaagtttgt--gatacttagggcatgtgcacagtttgtttgattccaaaataaggcatgtacataacggcagattatgttgatgtggtcaagatgaatagt-------------------------------------------------------------------------------------------
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TTGTTTGATACAAAGCACAACGGGATACTTGATTTTGAAGAGTTTGCACGAGCTCTCTCTGTCTTTCATCCCAATGCACCAATTGATGATAAGATTGAGTgtaagaatgacaaatgtttagaagactttagctatgtggtctacttttttatctgggttttgaataggaagagcatttattggagagg--gagctagatcatgttttgtttctgtagtttatttatttccttaatgcattagttattaatagtaatgcatatgttgggcatttccaacttttcttttttgcag
upper sequence: GRMZM2G112672_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA07G39940.1 (Glycine max), 5'ss of exon 5
TTATTTGATACAAAACACAATGGGATTCTTGGATTTGAAGAATTTGCTCGGGCGCTCTCAGTATTTCATCCCAATGCTCCCTTGGATGAGAAGATCGAGTgtaagtttgt--gatacttagggcatgtgcacagtttgtttgatt--ccaaaataaggcatgtacataacggcagattatgttgatgtggtcaagatgaatagt-----------------------------------------------------------------------------------------
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TTGTTTGATACAAAGCACAATGGGATACTTGATTTTGAAGAGTTTGCACGTGCTCTCTCTGTCTTTCATCCCAATGCACCAATTGATGATAAGATTGAGTgtaagaatgacaaatgtttagaagactttagctatctggtctactgttttatctgggttttgaatgggaagggcatttattgtaaagggagctagatcattttttttgtttctgtagtttatttatttccttaatgcatttgttattgatagtaatgcatatgttggggattcccaactcttcctttttgcag
upper sequence: GRMZM2G112672_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA18G08230.1 (Glycine max), 5'ss of exon 6
TTATTTGATACAAAACACAATGGGATTCTTGGATTTGAAGAATTTGCTCGGGCGCTCTCAGTATTTCATCCCAATGCTCCCTTGGATGAGAAGATCGAGTgtaagtt-tgtgatacttagggcatgtgcacagtttgtttga-------ttccaaaataaggcatgtacataacggcagattatgttgatgtggtcaaga--tgaatagt---------------------------------------------------------
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-TATTTGACACAAAGCACAATGGGATACTAGGTTTTGAAGAGTTTGCTCGTGCTCTCTCCGTTTTTCATCCAAATGCCCCTATTGATGATAAGATCGAATGtatgttgcacaaatttttttccctacaattattatttttgcatgaatttttctatattctatttttaaatttaagaacaatgcacaactggaatcaagtctttaattttctttaataacatttttaaataaaccaaaattgactccatatgatatcatgtttcagt
upper sequence: GRMZM2G112672_T02 (Zea mays), 5'ss of exon 4
lower sequence: AT5G55990.1 (Arabidopsis thaliana), 5'ss of exon 6
TTATTTGATACAAAACACAATGGGATTCTTGGATTTGAAGAATTTGCTCGGGCGCTCTCAGTATTTCATCCCAATGCTCCCTTGGATGAGAAGATCGAGTgtaagtttgtgatacttagggcatgtgcacagtttgtttgattccaaaataaggcatgtacataacggcagattatgttgatgtggtcaagatgaatagt
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TTGTTTGATACAAAGCACAATGGAATACTGGGGTTTGAGGAATTTGCTCGTGCTCTCTCCGTCTTTCACCCAAATGCGCCTATAGATGACAAAATTCACTgtacgtcc------cttttagcttgtatctcaaaaacaagatt--gggataa--cacattaatgata-tatactatttttttgcag--------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|83279282|gb|DV943290.1|DV943290EST: GGCGCTCTCAGTATTTCATCCCAATGCTCCCTTGGATGAGAAGATCGAGT TTTCATTCCAACTTTATGACCTCAAGCAACAAGGCTTCATTGAAAGACAGG
genomic: GGCGCTCTCAGTATTTCATCCCAATGCTCCCTTGGATGAGAAGATCGAGTgtaagtttgt ... atccttgcagTTTCATTCCAACTTTATGACCTCAAGCAACAAGGCTTCATTGAAAGACAGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTATTTGATACAAAACACAATGGGATTCTTGGATTTGAAGAATTTGCTCGGGCGCTCTCAGTATTTCATCCCAATGCTCCCTTGGATGAGAAGATCGAGTgtaagtttgtgatacttagggcatgtgcacagtttgtttgattccaaaataaggcatgtacataacggcagattatgttgatgtggtcaagatgaatagt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caaaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagatgaa