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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttcaactatactggtttagtttactattgctgtattcatgctattactttattcatgtatttgtgtaatgcttacactgtacttaatgtctaatgttcagACCTCCAATGGCAAGAGCAAATGCACCCTTTGTCTCAGCATCCGGCAAAATCCTACTGCCACAACCTGTGGACATGTTTTCTGCTG

Basic information

species Zea mays
transcript GRMZM2G111614_T01
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78026945|gb|DV495332.1|DV495332
EST:     TCAGTGACATCCGCAGTGGTAAAGCTGCAGATATAGCTTCTCATTCAGAG                         ACCTCCAATGGCAAGAGCAAATGCACCCTTTGTCTCAGCATCCGGCAAAAT
genomic: TCAGTGACATCCGCAGTGGTAAAGCTGCAGATATAGCTTCTCATTCAGAGgtatttgctt ... taatgttcagACCTCCAATGGCAAGAGCAAATGCACCCTTTGTCTCAGCATCCGGCAAAAT
EST: gi|78027265|gb|DV495652.1|DV495652
EST:     CAGTGACATCCGCAGTGGTAAAGCTGCAGGATATAGCTTCTCATTCAGAG                         ACCTCCAATGGCAAGAGCAAATGCACCCTTTGTCTCAGCATCCGGCAAAAT
genomic: CAGTGACATCCGCAGTGGTAAAGCTGCA-GATATAGCTTCTCATTCAGAGgtatttgctt ... taatgttcagACCTCCAATGGCAAGAGCAAATGCACCCTTTGTCTCAGCATCCGGCAAAAT
EST: gi|211263166|gb|FL356033.1|FL356033
EST:     TCAGTGACATCCGCAGTGGTAAAGCTGCAGATATAGCTTCTCATTCAGAG                         ACCTCCAATGGCAAGAGCAAATGCACCCTTTGTCTCAGCATCCGGCAAAAT
genomic: TCAGTGACATCCGCAGTGGTAAAGCTGCAGATATAGCTTCTCATTCAGAGgtatttgctt ... taatgttcagACCTCCAATGGCAAGAGCAAATGCACCCTTTGTCTCAGCATCCGGCAAAAT
EST: gi|78111108|gb|DV529505.1|DV529505
EST:     TCAGTGACATCCGCAGTGGTAAAGCTGCAGATATAGCTTCTCATTCAGAG                         ACCTCCAATGGCAAGAGCAAATGCACCCTTTGTCTCAGCATCCGGCAAAAT
genomic: TCAGTGACATCCGCAGTGGTAAAGCTGCAGATATAGCTTCTCATTCAGAGgtatttgctt ... taatgttcagACCTCCAATGGCAAGAGCAAATGCACCCTTTGTCTCAGCATCCGGCAAAAT
EST: gi|78026036|gb|DV494423.1|DV494423
EST:     TCAGTGACATCCGCAGTGGAAAAGCTGCAGATATAGCTTCTCATTCAGAG                         ACCTCCAATGGCAAGAGCAAATGCACCCTTTGTCTCAGCATCCGGCAAAAT
genomic: TCAGTGACATCCGCAGTGGTAAAGCTGCAGATATAGCTTCTCATTCAGAGgtatttgctt ... taatgttcagACCTCCAATGGCAAGAGCAAATGCACCCTTTGTCTCAGCATCCGGCAAAAT
EST: gi|94474488|gb|EB703446.1|EB703446
EST:     TCAGTGACATCCGCAGTGGTAAAGCTGCAGATATAGCTTTTCATTCAGAG                         ACCTCCAATGGCAAGAGCAAATGCACCCTTTGTCTCAGCATCCGGCAAAAT
genomic: TCAGTGACATCCGCAGTGGTAAAGCTGCAGATATAGCTTCTCATTCAGAGgtatttgctt ... taatgttcagACCTCCAATGGCAAGAGCAAATGCACCCTTTGTCTCAGCATCCGGCAAAAT
EST: gi|78025723|gb|DV494110.1|DV494110
EST:     TCAGTGACATCCGCAGTGGTAAAGCTGCAGATATAGCTTCTCATTCAGAG                         ACCTCCAATGGCAAGAGCAAATGCACCCTTTGTCTCAGCATCCGGCAAAAT
genomic: TCAGTGACATCCGCAGTGGTAAAGCTGCAGATATAGCTTCTCATTCAGAGgtatttgctt ... taatgttcagACCTCCAATGGCAAGAGCAAATGCACCCTTTGTCTCAGCATCCGGCAAAAT
EST: gi|78104551|gb|DV522969.1|DV522969
EST:     TCAGTGACATCCGCAGTGGTAAAGCTGCAGATATAGCTTCTCATTCAGAG                         ACCTCCAATGGCAAGAGCAAATGCACCCTTTGTCTCAGCATCCGGCAAAAT
genomic: TCAGTGACATCCGCAGTGGTAAAGCTGCAGATATAGCTTCTCATTCAGAGgtatttgctt ... taatgttcagACCTCCAATGGCAAGAGCAAATGCACCCTTTGTCTCAGCATCCGGCAAAAT
EST: gi|78026496|gb|DV494883.1|DV494883
EST:     TCAGTGACATCCGCAGTGGTAAAGCTGCAGATATAGCTTCTCATTCAGAG                         ACCTCCAATGGCAAGAGCAAATGCACCCTTTGTCTCAGCATCCGGCAAAAT
genomic: TCAGTGACATCCGCAGTGGTAAAGCTGCAGATATAGCTTCTCATTCAGAGgtatttgctt ... taatgttcagACCTCCAATGGCAAGAGCAAATGCACCCTTTGTCTCAGCATCCGGCAAAAT
EST: gi|78081930|gb|DV510342.1|DV510342
EST:     TCAGTGACATCCGCAGTGGTAAAGCTGCAGATATAGCTTCTCATTCAGAG                         ACCTCCAATGGCAAGAGCAAATGCACCCTTTGTCTCAGCATCCGGCAAAAT
genomic: TCAGTGACATCCGCAGTGGTAAAGCTGCAGATATAGCTTCTCATTCAGAGgtatttgctt ... taatgttcagACCTCCAATGGCAAGAGCAAATGCACCCTTTGTCTCAGCATCCGGCAAAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actttattcatgtatttgtgtaatgcttacactgtacttaatgtctaatgttcagACCTCCAATGGCAAGAGCAAATGCACCCTTTGTCTCAGCATCCGGCAAAATCCTACTGCCACAACCTGTGGACATGTTTTCTGCTG
         atgtattt  TA-rich tract