1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TTGTGTATTCTTGGAGCTGAAAGACTCCGAAGAAGTAATATATCGTCAATAGCTAGTTCCATTAATCAAATATCATCTGGAGGCTATCCATCGACTACAGgtgctctctcttgtacttaatttgtattatgctgaatcttagagttacttgctattaacgtaatgcagatacttaactgtttgtttctttttttgtcctggtacatgttaaaccag
species | Zea mays |
transcript | GRMZM2G111614_T01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: ATCGACTACAG GTCGGGGCATCCCTGTTCTAAATGAAGATGGAAATATCATCAGTGACATCCEST: gi|211263166|gb|FL356033.1|FL356033
genomic: ATCGACTACAGgtgctctctc ... gttaaaccagGTCGGGGCATCCCTGTTCTAAATGAAGATGGAAATATCATCAGTGACATCC
EST: AGCTAGTTCCATTAATCAAATATCATCTGGAGGCTATCCATCGACTACAG GTCGGGGCATCCCTGTTCTAAATGAAGATGGAAATATCATCAGTGACATCCEST: gi|78111108|gb|DV529505.1|DV529505
genomic: AGCTAGTTCCATTAATCAAATATCATCTGGAGGCTATCCATCGACTACAGgtgctctctc ... gttaaaccagGTCGGGGCATCCCTGTTCTAAATGAAGATGGAAATATCATCAGTGACATCC
EST: AGCTAGTTCCATTAATCAAATATCATCTGGAGGCTATCCATCGACTACAG GTCGGGGCATCCCTGTTCTAAATGAAGATGGAAATATCATCAGTGACATCCEST: gi|94474488|gb|EB703446.1|EB703446
genomic: AGCTAGTTCCATTAATCAAATATCATCTGGAGGCTATCCATCGACTACAGgtgctctctc ... gttaaaccagGTCGGGGCATCCCTGTTCTAAATGAAGATGGAAATATCATCAGTGACATCC
EST: AGCTAGTTCCATTAATCAAATATCATCTGGAGGCTATCCATCGACTACAG GTCGGGGCATCCCTGTTCTAAATGAAGATGGAAATATCATCAGTGACATCCEST: gi|78025723|gb|DV494110.1|DV494110
genomic: AGCTAGTTCCATTAATCAAATATCATCTGGAGGCTATCCATCGACTACAGgtgctctctc ... gttaaaccagGTCGGGGCATCCCTGTTCTAAATGAAGATGGAAATATCATCAGTGACATCC
EST: AGCTAGTTCCATTAATCAAATATCATCTGGAGGCTATCCATCGACTACAG GTCGGGGCATCCCTGTTCTAAATGAAGATGGAAATATCATCAGTGACATCCEST: gi|78104551|gb|DV522969.1|DV522969
genomic: AGCTAGTTCCATTAATCAAATATCATCTGGAGGCTATCCATCGACTACAGgtgctctctc ... gttaaaccagGTCGGGGCATCCCTGTTCTAAATGAAGATGGAAATATCATCAGTGACATCC
EST: GTTCCATTAATCAAATATCATCTGGAGGCTATCCATCGACTACAG GTCGGGGCATCCCTGTTCTAAATGAAGATGGAAATATCATCAGTGACATCCEST: gi|78081930|gb|DV510342.1|DV510342
genomic: GTTCCATTAATCAAATATCATCTGGAGGCTATCCATCGACTACAGgtgctctctc ... gttaaaccagGTCGGGGCATCCCTGTTCTAAATGAAGATGGAAATATCATCAGTGACATCC
EST: GCTAGTTCCATTAATCAAATATCATCTGGAGGGTATCCCATCGACTACAG GTCGGGGCATCCCTGTTCTAAATGAAGATGGAAATATCATCAGTGACATCC
genomic: GCTAGTTCCATTAATCAAATATCATCTGGAGGCTAT-CCATCGACTACAGgtgctctctc ... gttaaaccagGTCGGGGCATCCCTGTTCTAAATGAAGATGGAAATATCATCAGTGACATCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGTGTATTCTTGGAGCTGAAAGACTCCGAAGAAGTAATATATCGTCAATAGCTAGTTCCATTAATCAAATATCATCTGGAGGCTATCCATCGACTACAGgtgctctctcttgtacttaatttgtattatgctgaatcttagagttacttgctattaacgtaatgcagatacttaactgtttgtttctttttttgtcctggtacatgttaaaccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG