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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gagccgccagcactgggtctattattttcttacctcacatatatatgcactatacttttatccatgtgacatttttttggtatactcccctttgttgcagGTCTGTATTATCATTTGCCAAAGCGAGCAGCTGGTATTCGCTATGTATTCATTGGCAAGCCAATGAATCAGAGACCTAG

Basic information

species Zea mays
transcript GRMZM2G111614_T01
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78104552|gb|DV522970.1|DV522970
EST:     TTTTATACAGTTGGCTATCCGGACAAATCTAATGTTCTTCTATTTTGAAG                         GTCTGTATTATCATTTGCCAAAGCGAGCAGCTGGTATTCGCTATGTATTCA
genomic: TTTTATACAGTTGGCTATCCGGACAAATCTAATGTTCTTCTATTTTGAAGgtatgaaagc ... tttgttgcagGTCTGTATTATCATTTGCCAAAGCGAGCAGCTGGTATTCGCTATGTATTCA
EST: gi|211263166|gb|FL356033.1|FL356033
EST:     TTTTATACAGTTGGCTATCCGGACAAATCTAATGTTCTTCTATTTTGAAG                         GTCTGTATTATCATTTGCCAAAGCGAGCAGCTGGTATTCGCTATGTATTCA
genomic: TTTTATACAGTTGGCTATCCGGACAAATCTAATGTTCTTCTATTTTGAAGgtatgaaagc ... tttgttgcagGTCTGTATTATCATTTGCCAAAGCGAGCAGCTGGTATTCGCTATGTATTCA
EST: gi|78111109|gb|DV529506.1|DV529506
EST:     TTTTATACAGTTGGCTATCCGGACAAATCTAATGTTCTTCTATTTTGAAG                         GTCTGTATTATCATTTGCCAAAGCGAGCAGCTGGTATTCGCTATGTATTCA
genomic: TTTTATACAGTTGGCTATCCGGACAAATCTAATGTTCTTCTATTTTGAAGgtatgaaagc ... tttgttgcagGTCTGTATTATCATTTGCCAAAGCGAGCAGCTGGTATTCGCTATGTATTCA
EST: gi|88756947|gb|DY541088.1|DY541088
EST:     TTTTATACAGTTGGCTATCCGGACAAATCTAATGTTCTTCTATTTTGAAG                         GTCTGTATTATCATTTGCCAAAGCGAGCAGCTGGTATTCGCTATGTATTTC
genomic: TTTTATACAGTTGGCTATCCGGACAAATCTAATGTTCTTCTATTTTGAAGgtatgaaagc ... tttgttgcagGTCTGTATTATCATTTGCCAAAGCGAGCAGCTGGTATTCGCTATGTATT-C


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcactatacttttatccatgtgacatttttttggtatactcccctttgttgcagGTCTGTATTATCATTTGCCAAAGCGAGCAGCTGGTATTCGCTATGTATTCATTGGCAAGCCAATGAATCAGAGACCTAG
                                     tactcccctttgtt  CT-rich tract
                         atttttttggtata  TA-rich tract