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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aattgttccatattgtacaaatttgtggcccataaaagagtttcgcaacaattctatactactatattgatgctgcccatgttgtaattaaactattcagGTTGCAACCTTGCATGGACTTCCACCTACTCCTGCTAGGCGGATTCTATTCATTTTGTACCAAACTACTGTGCCCTACCTTGCTGAACGGATCAG

Basic information

species Zea mays
transcript GRMZM2G111614_T01
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78104552|gb|DV522970.1|DV522970
EST:     CTGGTTCAGGCCAGCAAACACTTGGTGAAGAATATTGTGATATATCTCAG                         GTTGCAACCTTGCATGGACTTCCACCTACTCCTGCTAGGCGGATTCTATTC
genomic: CTGGTTCAGGCCAGCAAACACTTGGTGAAGAATATTGTGATATATCTCAGgtcattacat ... aactattcagGTTGCAACCTTGCATGGACTTCCACCTACTCCTGCTAGGCGGATTCTATTC
EST: gi|211419998|gb|FL348278.1|FL348278
EST:     CTGGTTCAGGCCAGCAAACACTTGGTGAAGAATATTGTGATATATCTCAG                         GTTGCAACCTTGCATGGACTTCCACCTACTCCTGCTAGGCGGATTCTA
genomic: CTGGTTCAGGCCAGCAAACACTTGGTGAAGAATATTGTGATATATCTCAGgtcattacat ... aactattcagGTTGCAACCTTGCATGGACTTCCACCTACTCCTGCTAGGCGGATTCTA
EST: gi|78111109|gb|DV529506.1|DV529506
EST:     CTGGTTCAGGCCAGCAAACACTTGGTGAAGAATATTGTGATATATCTCAG                         GTTGCAACCTTGCATGGACTTCCACCTACTCCTGCTAGGCGGATTCTATTC
genomic: CTGGTTCAGGCCAGCAAACACTTGGTGAAGAATATTGTGATATATCTCAGgtcattacat ... aactattcagGTTGCAACCTTGCATGGACTTCCACCTACTCCTGCTAGGCGGATTCTATTC
EST: gi|88756947|gb|DY541088.1|DY541088
EST:     CTGGTTCAGGCCAGCAAACACTTGGTGAAGAATATTGTGATATATCTCAG                         GTTGCAACCTTGCATGGACTTCCACCTACTCCTGCTAGGCGGATTCTATTC
genomic: CTGGTTCAGGCCAGCAAACACTTGGTGAAGAATATTGTGATATATCTCAGgtcattacat ... aactattcagGTTGCAACCTTGCATGGACTTCCACCTACTCCTGCTAGGCGGATTCTATTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caacaattctatactactatattgatgctgcccatgttgtaattaaactattcagGTTGCAACCTTGCATGGACTTCCACCTACTCCTGCTAGGCGGATTCTATTCATTTTGTACCAAACTACTGTGCCCTACCTTGCTGAACGGATCAG
                   tattgat  putative branch site (score: 3)
                                    ttgtaattaaactatt  TA-rich tract