Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgctacttagttttcatgtttgcccttgtggaattaccatgacgcgcaacggtactgactctgcatttgcgtgcgtgaagCATTGGAGATCTTGGAGTCGTCAGGCATCAAGCTGATTGAGAAAGTGGAGATAATAATATGATGTAGCTGGGTACATATATCTTTTGTACATATTATATG

Basic information

species Zea mays
transcript GRMZM2G110324_T01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G110324_T01 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os02g54254.1 (Oryza sativa), 3'ss of exon 25
----gtgctacttagttttcatgtttgcccttg--tggaattaccatgacgcgcaacgg--------tactgactc-tgcatttgcgtgcgtgaagCATTGGAGATCTTGGAGTCGTCAGGCATCAAGCTGATTGAGAAAGTGGAGA--TAATAATATGATGTAGCTGGGTACATATATCTTTTGTACATATTATATG
    |||| | | |  |   |         |||  |    ||| |    |  |||||||        | ||||  | ||| ||||  |  ||||||| ||||||||||||||||| || || |||||||||   |||| ||||||||  | | |||  ||   |  |  ||| | || |    ||    ||   | | 
gtaagtgcaaatcaaatcagacaccacttgttgcttatggttatcgaacccagcaacggcggtgggttgctgatacgtgcgtttgattttgtgaagCGTTGGAGATCTTGGAGTCATCGGGTATCAAGCTGGCGGAGAGAGTGGAGACCTGAGAATCGGACCCAA-TATGTATA-ATGTAGCATGGTGGTAGCTTCTC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtggaattaccatgacgcgcaacggtactgactctgcatttgcgtgcgtgaagCATTGGAGATCTTGGAGTCGTCAGGCATCAAGCTGATTGAGAAAGTGGAGATAATAATATGATGTAGCTGGGTACATATATCTTTTGTACATATTATATG
                           tactgac  putative branch site (score: 1)
      aatta  TA-rich tract