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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCACCAAGCGACGCTGCTGGAGTTCGGGAAGGTTGAAAATGGCAGATCCACCACTGCCATGGCCCTGACCGTTGGTATTCCAGCGGCAATAGGGGCCCTGgtagcaaacctaaccacaattttacttgaacaatagtcagaaaaaaaaacaatgtatgttcatttgttctcggaccatgttatgttgcag

Basic information

species Zea mays
transcript GRMZM2G110324_T01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G110324_T01 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os02g54254.1 (Oryza sativa), 5'ss of exon 24
GCACCAAGCGACGCTGCTGGAGTTCGGGAAGGTTGAAAATGGCAGATCCACCACTGCCATGGCCCTGACCGTTGGTATTCCAGCGGCAATAGGGGCCCTGgtagcaaacct-----aaccacaattttacttg----aacaatagtcagaaaaaaaaacaatgtatgttcatttgttctcggaccatgttatgttgcag
||||||||| || || || ||||| || |||||||||||||||||  | |||||||||||||| || || || || || ||||| |||||||| || ||||||   | |       ||||||| ||  |||||    |   |||       ||| |   ||  | |  |||||  | ||||     | | ||||| |||
GCACCAAGCAACCCTACTTGAGTTTGGAAAGGTTGAAAATGGCAGGCCTACCACTGCCATGGCTCTCACGGTCGGAATACCAGCAGCAATAGGAGCTCTGgtaagtagctctcttgaaccaca-ttacacttgtcatacgcatacctgatcaaagaggaaacttgtactcatt-atactcgt----tttcatgtttcag

upper sequence: GRMZM2G110324_T01 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA17G04920.1 (Glycine max), 5'ss of exon 23
GCACCAAGCGACGCTGCTGGAGTTCGGGAAGGTTGAAAATGGCAGATCCACCACTGCCATGGCCCTGACCGTTGGTATTCCAGCGGCAATAGGGGCCCTGgtagcaaacctaaccacaattttacttgaacaatagtcagaaaaaaaaacaatgtatgtt--catttgttctcggaccatgttatgttgcag
|||   ||| ||  | || || || ||||||  |    |||  | | |||| |||||||||||||| || |||||||||||||| ||  | || ||  |||||       |  |      ||   ||      || ||  | ||||      ||     |  | |||||| | | |                
GCATAGAGCTACTTTACTTGAATTTGGGAAGACTCTTGATGAAAAAACCACAACTGCCATGGCCCTTACTGTTGGTATTCCAGCTGCTGTTGGAGCTTTGgtattttctgtccctttctgttcttttatgttgtattccaagaaaatgctgttggtgaatgacgtttgtttttgcag---------------