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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagcaaacctaaccacaattttacttgaacaatagtcagaaaaaaaaacaatgtatgttcatttgttctcggaccatgttatgttgcagCTATTGCTACAGACGAACGGAGTGATCAGGCCTCTGCAACCGGAAATCTACATTCCAG

Basic information

species Zea mays
transcript GRMZM2G110324_T01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G110324_T01 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os02g54254.1 (Oryza sativa), 3'ss of exon 24
----------gtagcaaacctaaccacaatt-ttacttgaacaa-tagtcagaaaaaaaaacaatgtatgtt-catttgttctc--ggaccatgttatgttgcagCTATTGCTACAGACGAACGGAGTGATCAGGCCTCTGCAACCGGAAATCTACATTCCAG
           |    ||||  |  ||| || | |   | | |  |  ||| | |  |||    |     ||  | | ||| ||  |   ||  |  || | |||     | | || | ||| |||||||||||||||||| |||| ||||| ||||||||||
gtaagtagctctcttgaaccacattacacttgtcatacgcatacctgatcaaagaggaaacttgtactcattatactcgttttcatgtttcagCTGTTGCTCCAGAACAAGATCCAAAAGAAAGGAGTGATCAGGCCTCTGGAACCTGAAATTTACATTCCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtcagaaaaaaaaacaatgtatgttcatttgttctcggaccatgttatgttgcagCTATTGCTACAGACGAACGGAGTGATCAGGCCTCTGCAACCGGAAATCTACATTCCAG
     aaaaaaaaacaatgta  TA-rich tract