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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagatgtatccatgttctaagtatttccgttattggtagtagcacaatgaggtttctacatccaaatattcttaacaatatttcacgtggcatattttgtggaatactaataattatcttcctccttttcagTTGGAACCCAGCTGGTGCCCTCCGGTCAGGGAAAAATCCTGCTGTCTACAAATTTCTTGGTGAGACGATCCATGTAGATG

Basic information

species Zea mays
transcript GRMZM2G110324_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G110324_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os02g54254.2 (Oryza sativa), 3'ss of exon 18
gtagatgtatccatgttctaagtatttccgttattggtagtagcacaatgaggtttctacatccaaatattcttaacaatatttcacgtggcatattttgt--ggaatactaataatta--tcttcctccttttcagTTGGAACCCAGCTGGTGCCCTCCGGTCAGGGAAAAATCCTGCTGTCTACAAATTTCTTGGTGAGACGATCCATGTAGATG
                                       |||  || |||| ||| | | ||   ||    |    | || || || |   || |||||    | || | | ||  ||   | |||||| |||  |||||||  |||||||||||| ||||  |||||| ||| ||||||||||||||||||| ||| || |  |||||||||||||
---------------------------------------gtaa-actatgatgttcccatattggaaataacaatgccatgttgcatgcaacagattttacaagaaacaatcatggttgctttttcctcttttgtagTTGGAGTCCAGCTGGTGCCATCCGTGCAGGGAGAAACCCTGCTGTCTACAAATTTCATGGAGAAATCATCCATGTAGATG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatttcacgtggcatattttgtggaatactaataattatcttcctccttttcagTTGGAACCCAGCTGGTGCCCTCCGGTCAGGGAAAAATCCTGCTGTCTACAAATTTCTTGGTGAGACGATCCATGTAGATG
                           tactaat  putative branch site (score: 1)
                                    ttatcttcctcctttt  putative PPT
                         aatactaataattatc  TA-rich tract