1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tttttttattgttttgcaattttctaaagtccattgtgtacttaaatacataatgccatctgcttcatttatttatgttgcttgttcatttcttctctagATTGGGGAAATTGTGACTACGAGGAAAGGAAAATATGCGGTTGAGTTGATTCGCTATTTGTAATCATGGAACTGGTCTACTTTCATGTCTGAAACTCTGA
species | Zea mays |
transcript | GRMZM2G105425_T03 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CCCTCAAATCTGGAGATGTTGTTTCTGTTAGTGGGATGGGAAGGTTAAAG ATTGGGGAAATTGTGACTACGAGGAAAGGAAAATATGCGGTTGAGTTGATTEST: gi|78090612|gb|DV518986.1|DV518986
genomic: CCCTCAAATCTGGAGATGTTGTTTCTGTTAGTGGGATGGGAAGGTTAAAGgtaatttgaa ... tcttctctagATTGGGGAAATTGTGACTACGAGGAAAGGAAAATATGCGGTTGAGTTGATT
EST: CCCTCAAATCTGGAGATGTTGTTTCTGTTAGTGGGATGGGAAGGTTAAAG ATTGGGGAAATTGTGACTACGAGGAAAGGAAAATATGCGGTTGAGTTGATT
genomic: CCCTCAAATCTGGAGATGTTGTTTCTGTTAGTGGGATGGGAAGGTTAAAGgtaatttgaa ... tcttctctagATTGGGGAAATTGTGACTACGAGGAAAGGAAAATATGCGGTTGAGTTGATT
atacataatgccatctgcttcatttatttatgttgcttgttcatttcttctctagATTGGGGAAATTGTGACTACGAGGAAAGGAAAATATGCGGTTGAGTTGATTCGCTATTTGTAATCATGGAACTGGTCTACTTTCATGTCTGAAACTCTGA
ttgcttgttcatttct CT-rich tract
ttcatttatttatgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttttttattgttttgcaattttctaaagtccattgtgtacttaaatacataatgccatctgcttcatttatttatgttgcttgttcatttcttctctagATTGGGGAAATTGTGACTACGAGGAAAGGAAAATATGCGGTTGAGTTGATTCGCTATTTGTAATCATGGAACTGGTCTACTTTCATGTCTGAAACTCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - -tgttttg
- - - - - - - - - - - - - - - - - - - - - -aaataca
- - - - - - - - - - - - - - - - - - - - - - - - - -aatgcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgct