1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...atacatgactttaactacattttcttgtttattttagcattcctcagaaatatatggttattcttgctattcattggctcatattaacatccttgtgcagGCAGAAAGGGCTTCCCAACGAAGAAATGTTTTTCACACCAATTTTCTTACTCCACCTATAGTGAAAGAGGCTATGCTGGCACTTGAAAAGTTTGCAGATA
species | Zea mays |
transcript | GRMZM2G105425_T03 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GAAGCGTGGACAGGAATTCAGCGGAGGAAGTCAGGAACATTCTGAATATG GCAGAAAGGGCTTCCCAACGAAGAAATGTTTTTCACACCAATTTTCTTACTEST: gi|67013256|gb|CO442005.1|CO442005
genomic: GAAGCGTGGACAGGAATTCAGCGGAGGAAGTCAGGAACATTCTGAATATGgtaatttgat ... ccttgtgcagGCAGAAAGGGCTTCCCAACGAAGAAATGTTTTTCACACCAATTTTCTTACT
EST: GAAGCGTGGACAGGAATTCAGCGGAGGAAGTCAGGAACATTCTGAATATG GCAGAAAGGGCTTCCCAACGAAGAGATGTTTTTCACACCAATTTTCTTACTEST: gi|78090612|gb|DV518986.1|DV518986
genomic: GAAGCGTGGACAGGAATTCAGCGGAGGAAGTCAGGAACATTCTGAATATGgtaatttgat ... ccttgtgcagGCAGAAAGGGCTTCCCAACGAAGAAATGTTTTTCACACCAATTTTCTTACT
EST: GAAGCGTGGACAGGAATTCAGCGGAGGAAGTCAGGAACATTCTGAATATG GCAGAAAGGGCTTCCCAACGAAGAAATGTTTTTCACACCAATTTTCTTACTEST: gi|37418380|gb|CF646858.1|CF646858
genomic: GAAGCGTGGACAGGAATTCAGCGGAGGAAGTCAGGAACATTCTGAATATGgtaatttgat ... ccttgtgcagGCAGAAAGGGCTTCCCAACGAAGAAATGTTTTTCACACCAATTTTCTTACT
EST: GAAGCGTGGACAGGAATTCAGCGGAGGAAGTCAGGAACATTCTGAATATG GCAGAAAGGGCTTCCCAACGAAGAAATGTTTTTCACACCAATTTTCTTACT
genomic: GAAGCGTGGACAGGAATTCAGCGGAGGAAGTCAGGAACATTCTGAATATGgtaatttgat ... ccttgtgcagGCAGAAAGGGCTTCCCAACGAAGAAATGTTTTTCACACCAATTTTCTTACT
agaaatatatggttattcttgctattcattggctcatattaacatccttgtgcagGCAGAAAGGGCTTCCCAACGAAGAAATGTTTTTCACACCAATTTTCTTACTCCACCTATAGTGAAAGAGGCTATGCTGGCACTTGAAAAGTTTGCAGATA
tattaac putative branch site (score: 116)
catcctt CT-rich tract
atattaacat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atacatgactttaactacattttcttgtttattttagcattcctcagaaatatatggttattcttgctattcattggctcatattaacatccttgtgcagGCAGAAAGGGCTTCCCAACGAAGAAATGTTTTTCACACCAATTTTCTTACTCCACCTATAGTGAAAGAGGCTATGCTGGCACTTGAAAAGTTTGCAGATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
atacatg
- - - - - - aactaca
- - - - - - - - - - tttcttg
- - - - - - - - - - - - - - - - - - gcattcc
- - - - - - - - - - - - - - - - - - - - - - cagaaata