1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TCACACCAATTTTCTTACTCCACCTATAGTGAAAGAGGCTATGCTGGCACTTGAAAAGTTTGCAGATACCAAAGCAGTAGCTCAGGGTGGCTACCCTCAGgtcaaatttgatgacccaaatggtagtttgttaattgcttccattagcctatcaagtttctcattcttatatttatctag
species | Zea mays |
transcript | GRMZM2G105425_T03 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTGAAAAGTTTGCAGATACCAAAGCAGTAGCTCAGGGTGGCTACCCTCAG GCTGAGAGGTGCCGAATATCTGTTGGACACCCGGACGTCATGACAAGTAACEST: gi|76292416|gb|DV031984.1|DV031984
genomic: TTGAAAAGTTTGCAGATACCAAAGCAGTAGCTCAGGGTGGCTACCCTCAGgtcaaatttg ... atttatctagGCTGAGAGGTGCCGAATATCTGTTGGACACCCGGACGTCATGACAAGTAAC
EST: TTGAAAAGTTTGCAGATACCAAAGCAGTAGCTCAGGGTGGCTACCCTCAG GCTGAGAGGTGCCGAATATCTGTTGGACACCCGGACGTCATGACAAGTAACEST: gi|67013256|gb|CO442005.1|CO442005
genomic: TTGAAAAGTTTGCAGATACCAAAGCAGTAGCTCAGGGTGGCTACCCTCAGgtcaaatttg ... atttatctagGCTGAGAGGTGCCGAATATCTGTTGGACACCCGGACGTCATGACAAGTAAC
EST: TTGAAAAGTTTGCAGATACCAAAGCAGTAGCTCAGGGTGGCTACCCTCAG GCTGAGAGGTGCCGAATATCTGTTGGACACCCGGACGTCATGCCAAGTAACEST: gi|78090612|gb|DV518986.1|DV518986
genomic: TTGAAAAGTTTGCAGATACCAAAGCAGTAGCTCAGGGTGGCTACCCTCAGgtcaaatttg ... atttatctagGCTGAGAGGTGCCGAATATCTGTTGGACACCCGGACGTCATGACAAGTAAC
EST: TTGAAAAGTTTGCAGATACCAAAGCAGTAGCTCAGGGTGGCTACCCTCAG GCTGAGAGGTGCCGAATATCTGTTGGACACCCGGACGTCATGACAAGTAAC
genomic: TTGAAAAGTTTGCAGATACCAAAGCAGTAGCTCAGGGTGGCTACCCTCAGgtcaaatttg ... atttatctagGCTGAGAGGTGCCGAATATCTGTTGGACACCCGGACGTCATGACAAGTAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCACACCAATTTTCTTACTCCACCTATAGTGAAAGAGGCTATGCTGGCACTTGAAAAGTTTGCAGATACCAAAGCAGTAGCTCAGGGTGGCTACCCTCAGgtcaaatttgatgacccaaatggtagtttgttaattgcttccattagcctatcaagtttctcattcttatatttatctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA