1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ttgagacttgagagtttgggttaaatctgtgtttggtttcggtctgctcgttgcaaaccaatctaattactgtccttttctgatgggagtttttctacagGTGGGGAAAGTTGGTGTTTCATGCACTCAGATTCCTTTGCTTGCTCTAGAATATGAACCACCAAG
species | Zea mays |
transcript | GRMZM2G105425_T03 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TCCTTGTTGACCCAGAACTTGTTGACTATCTGATTTCTACCCTTGAAAAG GTGGGGAAAGTTGGTGTTTCATGCACTCAGATTCCTTTGCTTGCTCTAGAAEST: gi|76292416|gb|DV031984.1|DV031984
genomic: TCCTTGTTGACCCAGAACTTGTTGACTATCTGATTTCTACCCTTGAAAAGgtggattgtc ... ttttctacagGTGGGGAAAGTTGGTGTTTCATGCACTCAGATTCCTTTGCTTGCTCTAGAA
EST: TCCTTGTTGACCCAGAACTTGTTGACTATCTGATTTCTACCCTTGAAAAG GTGGGGAAAGTTGGTGTTTCATGCACTCAGATTCCTTTGCTTGCTCTAGAAEST: gi|67013256|gb|CO442005.1|CO442005
genomic: TCCTTGTTGACCCAGAACTTGTTGACTATCTGATTTCTACCCTTGAAAAGgtggattgtc ... ttttctacagGTGGGGAAAGTTGGTGTTTCATGCACTCAGATTCCTTTGCTTGCTCTAGAA
EST: TCCTTGTTGACCCAGAACTTGTTGACTATCTGATTTCTACCCTTGAAAAG GTGGNGGAAAGT-GGTGTTTCATGCACTCAGATTCCTTTGCTTGCTCTAGAEST: gi|78090612|gb|DV518986.1|DV518986
genomic: TCCTTGTTGACCCAGAACTTGTTGACTATCTGATTTCTACCCTTGAAAAGgtggattgtc ... ttttctacagGTGG-GGAAAGTTGGTGTTTCATGCACTCAGATTCCTTTGCTTGCTCTAGA
EST: TCCTTGTTGACCCAGAACTTGTTGACTATCTGATTTCTACCCTTGAAAAG GTGGGGAAAGTTGGTGTTTCATGCACTCAGATTCCTTTGCTTGCTCTAGAA
genomic: TCCTTGTTGACCCAGAACTTGTTGACTATCTGATTTCTACCCTTGAAAAGgtggattgtc ... ttttctacagGTGGGGAAAGTTGGTGTTTCATGCACTCAGATTCCTTTGCTTGCTCTAGAA
gctcgttgcaaaccaatctaattactgtccttttctgatgggagtttttctacagGTGGGGAAAGTTGGTGTTTCATGCACTCAGATTCCTTTGCTTGCTCTAGAATATGAACCACCAAG
ttctgat putative branch site (score: 41)
tttttctac putative PPT
aatctaatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgagacttgagagtttgggttaaatctgtgtttggtttcggtctgctcgttgcaaaccaatctaattactgtccttttctgatgggagtttttctacagGTGGGGAAAGTTGGTGTTTCATGCACTCAGATTCCTTTGCTTGCTCTAGAATATGAACCACCAAG
- - - - - - - - - - - - - -tgtgttt
- - - - - - - - - - - - - - - - - - - - - -ctgctcg
- - - - - - - - - - - - - - - - - - - - - - - - - - -caaacca