1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtattggattttgatcgtatggggcaacacttgcagctataatgtttttggatgctgtctgagaatctctactgatgcaactgcattgcatttcttttagGGCGGCGTAGAACCTAGCAAGTGCTTGGTTTTTGAAGACGCTCCTTCGGGTGTAGCTGCAGCGAAAAATGCCGGAAT
species | Zea mays |
transcript | GRMZM2G102231_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGGCAAACCATCCCCTGATATTTTTTCTTGCTGCTATGAGGAGGTTTGAG GGCGGCGTAGAACCTAGCAAGTGCTTGGTTTTTGAAGACGCTCCTTCGGGTEST: gi|4572923|gb|AI586572.1|AI586572
genomic: TGGCAAACCATCCCCTGATA-TTTTTCTTGCTGCTATGAGGAGGTTTGAGgtattggatt ... tttcttttagGGCGGCGTAGAACCTAGCAAGTGCTTGGTTTTTGAAGACGCTCCTTCGGGT
EST: CTGGCAAACCATCCCCTGATATTTTTCTTGCTGCTATGAGGAGGTTTGAG GGCGGCGTAGAACCTAGCAAGTGCTTGGTTTTTGAAGACGCTCCTTCGGGTEST: gi|5649952|gb|AI920312.1|AI920312
genomic: CTGGCAAACCATCCCCTGATATTTTTCTTGCTGCTATGAGGAGGTTTGAGgtattggatt ... tttcttttagGGCGGCGTAGAACCTAGCAAGTGCTTGGTTTTTGAAGACGCTCCTTCGGGT
EST: CTGGCAAACCATCCCCTGATATTTTTCTTGCTGCTATGAGGAGGTTTGAG GGCGGCGTAGAACCTAGCAAGTGCTTGGTTTTTGAAGACGCTCCTTCGGGTEST: gi|14245028|gb|BG842966.2|BG842966
genomic: CTGGCAAACCATCCCCTGATATTTTTCTTGCTGCTATGAGGAGGTTTGAGgtattggatt ... tttcttttagGGCGGCGTAGAACCTAGCAAGTGCTTGGTTTTTGAAGACGCTCCTTCGGGT
EST: CTGGCAAACCATCCCCTGATATTTTTCTTGCTGCTATGAGGAGGTTTGAG GGCGGCGTAGAACCTAGCAAGTGCTTGGTTTTTGAAGACGCTCCTTCGGGTEST: gi|4572860|gb|AI586509.1|AI586509
genomic: CTGGCAAACCATCCCCTGATATTTTTCTTGCTGCTATGAGGAGGTTTGAGgtattggatt ... tttcttttagGGCGGCGTAGAACCTAGCAAGTGCTTGGTTTTTGAAGACGCTCCTTCGGGT
EST: CTGGCAAACCATCCCCTGATATTTTTCTTGCTGCTATGAGGAGGTTTGAG GGCGGCGTAGAACCTAGCAAGTGCTTGGTTTTTGAAGACGCTCCTTCGGGTEST: gi|71438331|gb|DR819381.1|DR819381
genomic: CTGGCAAACCATCCCCTGATATTTTTCTTGCTGCTATGAGGAGGTTTGAGgtattggatt ... tttcttttagGGCGGCGTAGAACCTAGCAAGTGCTTGGTTTTTGAAGACGCTCCTTCGGGT
EST: TGGCAAACCATCCCCTGATATTTTTCTTGCTGCTATGAGGAGGTTTTGAG GGCGGCGTAGAACCTAGCAAGTGCTTGGEST: gi|50325634|gb|CO520760.1|CO520760
genomic: TGGCAAACCATCCCCTGATATTTTTCTTGCTGCTATGAGGAGGTTT-GAGgtattggatt ... tttcttttagGGCGGCGTAGAACCTAGCAAGTGCTTGG
EST: CTGGCAAACCATCCCCTGATATTTTTCTTGCTGCTATGAGGAGGTTTGAG GGCGGCGTAGAACCTAGCAAGTGCTTGGTTTTTGAAGACGCTCCTTCGGGTEST: gi|71759278|gb|DR957215.1|DR957215
genomic: CTGGCAAACCATCCCCTGATATTTTTCTTGCTGCTATGAGGAGGTTTGAGgtattggatt ... tttcttttagGGCGGCGTAGAACCTAGCAAGTGCTTGGTTTTTGAAGACGCTCCTTCGGGT
EST: CTGGCAAACCATCCCCTGATATTTTTCTTGCTGCTATGAGGAGGTTTGAG GGCGGCGTAGAACCTAGCAAGTGCTTGGTTTTTGAAGACGCTCCTTCGGGTEST: gi|50338089|gb|CO533215.1|CO533215
genomic: CTGGCAAACCATCCCCTGATATTTTTCTTGCTGCTATGAGGAGGTTTGAGgtattggatt ... tttcttttagGGCGGCGTAGAACCTAGCAAGTGCTTGGTTTTTGAAGACGCTCCTTCGGGT
EST: CTGGCAAACCATCCCCTGATATTTTTCTTGCTGCTATGAGGAGGTTTGAG GGCGGCGTAGAACCTAGCAAGTGCTTGGTTTTTGAAGACGCTCCTTCGGGTEST: gi|44901216|gb|CK827761.1|CK827761
genomic: CTGGCAAACCATCCCCTGATATTTTTCTTGCTGCTATGAGGAGGTTTGAGgtattggatt ... tttcttttagGGCGGCGTAGAACCTAGCAAGTGCTTGGTTTTTGAAGACGCTCCTTCGGGT
EST: CTGGCAAACCATCCCGTGATATTTTTCTTGCTGCTATGAGGAGGTTTGAG GGCGGCGTAGAACCTAGCAAGTGCTTGGTTTTTGAAGACGCTCCTTCGGGTEST: gi|24764320|gb|CA399485.1|CA399485
genomic: CTGGCAAACCATCCCCTGATATTTTTCTTGCTGCTATGAGGAGGTTTGAGgtattggatt ... tttcttttagGGCGGCGTAGAACCTAGCAAGTGCTTGGTTTTTGAAGACGCTCCTTCGGGT
EST: CTGGCAACCCATCCCCTGATATTTTTCTTGCTGCTATGAGGAGGTTTGAG GGCGGCGTAGAACCTAGCAAGTGCTTGGTTTTTGAAGACGCTCCTTCGGGTEST: gi|211035715|gb|FL440361.1|FL440361
genomic: CTGGCAAACCATCCCCTGATATTTTTCTTGCTGCTATGAGGAGGTTTGAGgtattggatt ... tttcttttagGGCGGCGTAGAACCTAGCAAGTGCTTGGTTTTTGAAGACGCTCCTTCGGGT
EST: CTGGCAAACCATCCCCTGATATTTTTCTTGCTGCTATGAGGAGGTTTGAG GGCGGCGTAGAMCCNTAGCAAGTGCTTGGTTTTTGAAGACGNCNTCYTTCGEST: gi|5649953|gb|AI920313.1|AI920313
genomic: CTGGCAAACCATCCCCTGATATTTTTCTTGCTGCTATGAGGAGGTTTGAGgtattggatt ... tttcttttagGGCGGCGTAGAACC-TAGCAAGTGCTTGGTTTTTGAAGACG-C-TCCTTCG
EST: CTGGCAAACCATCCCCTGATATTTTTCTTGCTGCTATGAGGAGGTTTGAG GGCGGCGTAGAACCTAGCAAGTGCTTGGTTTTTGAAGACGCTCCTTCGGGTEST: gi|149013686|gb|EE043136.2|EE043136
genomic: CTGGCAAACCATCCCCTGATATTTTTCTTGCTGCTATGAGGAGGTTTGAGgtattggatt ... tttcttttagGGCGGCGTAGAACCTAGCAAGTGCTTGGTTTTTGAAGACGCTCCTTCGGGT
EST: CTGGCAAACCATCCCCTGATATTTTTCTTGCTGCTATGAGGAGGTTTGAG GGCGGCGTAGAACCTAGCAAGTGCTTGGTTTTTGAAGACGCTCCTTCGGGTEST: gi|13558434|gb|BG549790.1|BG549790
genomic: CTGGCAAACCATCCCCTGATATTTTTCTTGCTGCTATGAGGAGGTTTGAGgtattggatt ... tttcttttagGGCGGCGTAGAACCTAGCAAGTGCTTGGTTTTTGAAGACGCTCCTTCGGGT
EST: CTGGCAAACCATCCCCTGATATTTTTCTTGCTGCTATGAGGAGGTTTGAG GGCGGCGTAGAACCTAGCAAGTGCTTGGTTTTTGAAGACGCTCCTTCGGGT
genomic: CTGGCAAACCATCCCCTGATATTTTTCTTGCTGCTATGAGGAGGTTTGAGgtattggatt ... tttcttttagGGCGGCGTAGAACCTAGCAAGTGCTTGGTTTTTGAAGACGCTCCTTCGGGT
ttttggatgctgtctgagaatctctactgatgcaactgcattgcatttcttttagGGCGGCGTAGAACCTAGCAAGTGCTTGGTTTTTGAAGACGCTCCTTCGGGTGTAGCTGCAGCGAAAAATGCCGGAAT
tactgat putative branch site (score: 2)
catttctttt putative PPT
atttctttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattggattttgatcgtatggggcaacacttgcagctataatgtttttggatgctgtctgagaatctctactgatgcaactgcattgcatttcttttagGGCGGCGTAGAACCTAGCAAGTGCTTGGTTTTTGAAGACGCTCCTTCGGGTGTAGCTGCAGCGAAAAATGCCGGAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG