1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GAGTACTACGTTTGGTGCATCATCTTCATGCCAACGGAGTACCAATGGCTGTTGCGACAGGgtaagtttctttacacctgatgatccatctggcctttccctcaacggtcaatgcccatcacctttcatgaattatagaacactactaatgttttgttgctgacccactgtgtcttacag
species | Zea mays |
transcript | GRMZM2G102231_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TTGGTGCATCATCTTCATGCCAACGGAGTACCAATGGCTGTTGCGACAGG ATCCCATAAACGCCATTTTGCACTGAAGACCCAGAATCACCAGGAAATGTTEST: gi|211016904|gb|FL048021.1|FL048021
genomic: TTGGTGCATCATCTTCATGCCAACGGAGTACCAATGGCTGTTGCGACAGGgtaagtttct ... tgtcttacagATCCCATAAACGCCATTTTGCACTGAAGACCCAGAATCACCAGGAAATGTT
EST: TTGGTGCATCATCTTCATGCCAACGGAGTACCAATGGCTGTTGCGACAGG ATCCCATAAACGCCATTTTGCACTGAAGACCCAGAATCACCAGGAAATGTTEST: gi|14245028|gb|BG842966.2|BG842966
genomic: TTGGTGCATCATCTTCATGCCAACGGAGTACCAATGGCTGTTGCGACAGGgtaagtttct ... tgtcttacagATCCCATAAACGCCATTTTGCACTGAAGACCCAGAATCACCAGGAAATGTT
EST: TTGGTGCATCATCTTCATGCCAACGGAGTACCAATGGCTGTTGCGACAGG ATCCCATAAACGCCATTTTGCACTGAAGACCCAGAATCACCAGGAAATGTTEST: gi|71438331|gb|DR819381.1|DR819381
genomic: TTGGTGCATCATCTTCATGCCAACGGAGTACCAATGGCTGTTGCGACAGGgtaagtttct ... tgtcttacagATCCCATAAACGCCATTTTGCACTGAAGACCCAGAATCACCAGGAAATGTT
EST: TTGGTGCATCATCTTCATGCCAACGGAGTACCAATGGCTGTTGCGACAGG ATCCCATAAACGCCATTTTGCACTGAAGACCCAGAATCACCAGGAAATGTTEST: gi|50325634|gb|CO520760.1|CO520760
genomic: TTGGTGCATCATCTTCATGCCAACGGAGTACCAATGGCTGTTGCGACAGGgtaagtttct ... tgtcttacagATCCCATAAACGCCATTTTGCACTGAAGACCCAGAATCACCAGGAAATGTT
EST: TTGGTGCATCATCTTCATGCCAACGGAGTACCAATGGCTGTTGCGACAGG ATCCCATAAACGCCATTTTGCACTGAAGACCCAGAATCACCAGGAAATGTTEST: gi|50338089|gb|CO533215.1|CO533215
genomic: TTGGTGCATCATCTTCATGCCAACGGAGTACCAATGGCTGTTGCGACAGGgtaagtttct ... tgtcttacagATCCCATAAACGCCATTTTGCACTGAAGACCCAGAATCACCAGGAAATGTT
EST: TTGGTGCATCATCTTCATGCCAACGGAGTACCAATGGCTGTTGCGACAGG ATCCCATAAACGCCATTTTGCACTGAAGACCCAGAATCACCAGGAAATGTTEST: gi|44901216|gb|CK827761.1|CK827761
genomic: TTGGTGCATCATCTTCATGCCAACGGAGTACCAATGGCTGTTGCGACAGGgtaagtttct ... tgtcttacagATCCCATAAACGCCATTTTGCACTGAAGACCCAGAATCACCAGGAAATGTT
EST: TTGGTGCATCATCTTCATGCCAACGGAGTACCAATGGCTGTCGCGACAGG ATCCCATAAACGCCATTTTGCACTGAAGACCCAGAATCACCAGGAAATGTTEST: gi|5649953|gb|AI920313.1|AI920313
genomic: TTGGTGCATCATCTTCATGCCAACGGAGTACCAATGGCTGTTGCGACAGGgtaagtttct ... tgtcttacagATCCCATAAACGCCATTTTGCACTGAAGACCCAGAATCACCAGGAAATGTT
EST: ATCTT-ATGCCAA-GGAG-ACCAATGGCTGTTGCGACAGG ATCCCATAAACGCCATTTTGCACTGAAGACCCAGAATCACCAGGAAATGTTEST: gi|149013686|gb|EE043136.2|EE043136
genomic: ATCTTCATGCCAACGGAGTACCAATGGCTGTTGCGACAGGgtaagtttct ... tgtcttacagATCCCATAAACGCCATTTTGCACTGAAGACCCAGAATCACCAGGAAATGTT
EST: TTGGTGCATCATCTTCATGCCAACGGAGTACCAATGGCTGTTGCGACAGG ATCCCATAAACGCCATTTTGCACTGAAGACCCAGAATCACCAGGAAATGTT
genomic: TTGGTGCATCATCTTCATGCCAACGGAGTACCAATGGCTGTTGCGACAGGgtaagtttct ... tgtcttacagATCCCATAAACGCCATTTTGCACTGAAGACCCAGAATCACCAGGAAATGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGTACTACGTTTGGTGCATCATCTTCATGCCAACGGAGTACCAATGGCTGTTGCGACAGGgtaagtttctttacacctgatgatccatctggcctttccctcaacggtcaatgcccatcacctttcatgaattatagaacactactaatgttttgttgctgacccactgtgtcttacag
- - - - - - - - - - - - - - - - - - - - - - - GCTGTT