1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GACGAGTGCGGCCTCAACGGCCTCCTCACCCCCGAGCAGTTCCTCGAGGAGCGCGAGAGCATGCTCCAAGCGCTCTTCCCATCCTGTACCAAGCTGCCAGgtgtgtcattgatgaacttggacgctgttggcgtcgatctgtacgccaatcactagtgtagtaccgtcttgtggtgctctctgtgaaggtgatctggacg...
species | Zea mays |
transcript | GRMZM2G102231_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CATCCTGTACCAAGCTGCCAG GAGTACTACGTTTGGTGCATCATCTTCATGCCAACGGAGTACCAATGGCTGEST: gi|211016904|gb|FL048021.1|FL048021
genomic: CATCCTGTACCAAGCTGCCAGgtgtgtcatt ... tttcttgcagGAGTACTACGTTTGGTGCATCATCTTCATGCCAACGGAGTACCAATGGCTG
EST: CCATCCTGTACCAAGCTGCCAG GAGTACTACGTTTGGTGCATCATCTTCATGCCAACGGAGTACCAATGGCTGEST: gi|14245028|gb|BG842966.2|BG842966
genomic: CCATCCTGTACCAAGCTGCCAGgtgtgtcatt ... tttcttgcagGAGTACTACGTTTGGTGCATCATCTTCATGCCAACGGAGTACCAATGGCTG
EST: CCAAGCTGCCAG GAGTACTACGTTTGGTGCATCATCTTCATGCCAACGGAGTACCAATGGCTGEST: gi|71438331|gb|DR819381.1|DR819381
genomic: CCAAGCTGCCAGgtgtgtcatt ... tttcttgcagGAGTACTACGTTTGGTGCATCATCTTCATGCCAACGGAGTACCAATGGCTG
EST: GCGCGAGAGCATGCTCCAAGCGCTCTTCCCATCCTGTACCAAGCTGCCAG GAGTACTACGTTTGGTGCATCATCTTCATGCCAACGGAGTACCAATGGCTGEST: gi|50325634|gb|CO520760.1|CO520760
genomic: GCGCGAGAGCATGCTCCAAGCGCTCTTCCCATCCTGTACCAAGCTGCCAGgtgtgtcatt ... tttcttgcagGAGTACTACGTTTGGTGCATCATCTTCATGCCAACGGAGTACCAATGGCTG
EST: TCCCATCCTGTACCAAGCTGCCAG GAGTACTACGTTTGGTGCATCATCTTCATGCCAACGGAGTACCAATGGCTGEST: gi|50338089|gb|CO533215.1|CO533215
genomic: TCCCATCCTGTACCAAGCTGCCAGgtgtgtcatt ... tttcttgcagGAGTACTACGTTTGGTGCATCATCTTCATGCCAACGGAGTACCAATGGCTG
EST: AGAGCATGCTCCAAGCGCTCTTCCCATCCTGTACCAAGCTGCCAG GAGTACTACGTTTGGTGCATCATCTTCATGCCAACGGAGTACCAATGGCTGEST: gi|44901216|gb|CK827761.1|CK827761
genomic: AGAGCATGCTCCAAGCGCTCTTCCCATCCTGTACCAAGCTGCCAGgtgtgtcatt ... tttcttgcagGAGTACTACGTTTGGTGCATCATCTTCATGCCAACGGAGTACCAATGGCTG
EST: ATGCTCCAAGCGCTCTTCCCATCGTGTACCAAGCTGCCAG GAGTACTACGTTTGGTGCATCATCTTCATGCCAACGGAGTACCAATGGCTGEST: gi|149013686|gb|EE043136.2|EE043136
genomic: ATGCTCCAAGCGCTCTTCCCATCCTGTACCAAGCTGCCAGgtgtgtcatt ... tttcttgcagGAGTACTACGTTTGGTGCATCATCTTCATGCCAACGGAGTACCAATGGCTG
EST: CGCGAGAGCATGGTCCAAGCGCTCTTCCCATTCCTGTACCAAGCTGCCAGG GAGGTACTACGTTTGGTGCATCATCTTCATGCCAACGGAGTACCAATGGC
genomic: CGCGAGAGCATGCTCCAAGCGCTCTTCCCA-TCCTGTACCAAGCTGCCA-Ggtgtgtcatt ... tttcttgcagGA-GTACTACGTTTGGTGCATCATCTTCATGCCAACGGAGTACCAATGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACGAGTGCGGCCTCAACGGCCTCCTCACCCCCGAGCAGTTCCTCGAGGAGCGCGAGAGCATGCTCCAAGCGCTCTTCCCATCCTGTACCAAGCTGCCAGgtgtgtcattgatgaacttggacgctgttggcgtcgatctgtacgccaatcactagtgtagtaccgtcttgtggtgctctctgtgaaggtgatctggacg
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC