Sequence
atgc intronic sequence ATGC exonic sequenceAATTTCCTGTTTAGCACTAGGGAAGAGCATTCTCCTATGAAGATAATTGATTTTGGTCTCTCAGATTTTATAAGACCAGgtattacatacctccacacaagggccatccaattgtaaagttctgttttacaaatatgttagaagtccattgccataaaatgaaacatgatatgaccttcctccaaaaaatgttctaatgcctgatgctcctgatgctttttccccctttacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G100560_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os10g36710.1 (Oryza sativa), 5'ss of exon 5
AATTTCCTGTTTAGCACTAGGGAAGAGCATTCTCCTATGAAGATAATTGATTTTGGTCTCTCAGATTTTATAAGACCAGgtattacatacctccaca-caagggccatccaa-----ttgta----aagttctgttttaca---aatatgttagaagtccattgccataaaatgaaacatgatatgaccttcctccaaa------aaatgttctaatgcct-gatgctcctgatgctttt------------tccccctttacag
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AATTTCCTATTCAGCACTAGAGATGACCATTCACCTATGAAGATCATCGACTTTGGACTTTCTGATTTTATACGGCCAGgtatttccccccaaaagaattatgcccttccaaagaacttgtgtttcatcttatgttttttttttactctattatgaatttgtcctgacatggtgaaa-atactgttttttgaaaccaaatagtgaaaatactcaagtgttttgatgacacacatatttatgattggtcaatgccttcttttacag
upper sequence: GRMZM2G100560_T01 (Zea mays), 5'ss of exon 5
lower sequence: AT2G46700.2 (Arabidopsis thaliana), 5'ss of exon 4
AATTTCCTGTTTAGCACTAGGGAAGAGCATTCTCCTATGAAGATAATTGATTTTGGTCTCTCAGATTTTATAAGACCAGgtattacatacctccacacaagggccatccaattgtaaagttctgttttacaaatatgttagaagtccattgccataaaatgaaacatgatatgaccttcctccaaaaaatgttctaatgcctgatgctcctgatgctttttccccctttacag
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AATTTTCTATTTACATCAAGCCGCGAAGACTCAGACTTGAAACTTATTGATTTTGGTCTCTCAGACTTTATTAGACCTGgtaagacttttcattctttcagg-ccttgtcactata----ctttccttatagctgc-ctactagtgaaatttgattgaattcctcaatgcag-------------------------------------------------------------
upper sequence: GRMZM2G100560_T01 (Zea mays), 5'ss of exon 5
lower sequence: Vv16s0098g01140.t01 (Vitis vinifera), 5'ss of exon 5
AATTTCCTGTTTAGCACTAGGGAAGAGCATTCTCCTATGAAGATAATTGATTTTGGTCTCTCAGATTTTATAAGACCAGgtattacatacctccacacaagggccatccaattgtaaagttctgttttacaaatatgttagaagtccattgccataaaatgaaacatgatatgaccttcctccaaaaaatgttctaatgcctgatgctcctgatgctttttccccctttacag
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AATTTTCTTTTTACCACAAGGGATGAGGATGCTCCGATGAAGGTTATTGATTTTGGTCTTTCTGATTTTATTAGAACAGgtaatggttgtgtccaca-agtaatcattctttcttcaataagcatt------atattgtagggctaaatt-tcataca-tggaacactttg-gtggttcaattagaagg--------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211246069|gb|FL212418.1|FL212418EST: TTCTCCTATGAAGATAATTGATTTTGGTCTCTCAGATTTTATAAGACCAG ATGAAAGGCTTAATGACATTGTTGGAAGTGCATACTATGTTGCTCCAGAAG
genomic: TTCTCCTATGAAGATAATTGATTTTGGTCTCTCAGATTTTATAAGACCAGgtattacata ... ccctttacagATGAAAGGCTTAATGACATTGTTGGAAGTGCATACTATGTTGCTCCAGAAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AATTTCCTGTTTAGCACTAGGGAAGAGCATTCTCCTATGAAGATAATTGATTTTGGTCTCTCAGATTTTATAAGACCAGgtattacatacctccacacaagggccatccaattgtaaagttctgttttacaaatatgttagaagtccattgccataaaatgaaacatgatatgaccttcctccaaaaaatgttctaatgcctgatgctcctgatgctttttccccctttacag
- - - - - - - - - - - - - - - - - - TGAAGA