Sequence
atgc intronic sequence ATGC exonic sequenceATACAATGAAGGGGATGCAAAAATTATTGTTGAACAGATATTAAAAGTAGTTGCCTTTTGCCATCTTCAGGGTGTTGTTCACCGTGATCTGAAGCCAGAGgtatgtggactctgttaagtatagtgtatcgcaaaatatgatttgtcgtggcgaaaaaaactgtagtatattccttctgataatccacccttggatgtttttaacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G100560_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os10g36710.1 (Oryza sativa), 5'ss of exon 4
ATACAATGAAGGGGATGCAAAAATTATTGTTGAACAGATATTAAAAGTAGTTGCCTTTTGCCATCTTCAGGGTGTTGTTCACCGTGATCTGAAGCCAGAGgtatgtggactctgttaagtatagtgtatcgcaaaatatgatttgtcgtggcgaaaaaaactgtagtatattccttctgataatccacccttggatgtttttaacag
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ATACACTGAGGAAGATGCTAAAGTTATCGTTGAACAAATATTAAATGTTGTTTCTTTCTGCCATCTTCAAGGCGTTGTTCACCGTGATTTGAAGCCAGAGgtctgtcttctctgtttagtaca---taaactgaattgtg-tttatcttgttacaaatatttttgatatatcccttctaataattctacccttgatcctatcag---
upper sequence: GRMZM2G100560_T01 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA04G40920.1 (Glycine max), 5'ss of exon 4
ATACAATGAAGGGGATGCAAAAATTATTGTTGAACAGATATTAAAAGTAGTTGCCTTTTGCCATCTTCAGGGTGTTGTTCACCGTGATCTGAAGCCAGAGgtatgtggactctgttaagtatagtgtatcgcaaaatatgatttgtcgtggcgaaaaa-aactgtagtatattccttctg-ataatccacccttggatgtttttaacag-----
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ATACCCAGAGGATGACGCTAAAGCTATTCTTGTACAAATTCTAGATGTAGTTGCGTTTTGTCATCTACAAGGAGTAGTTCACCGTGATCTAAAACCAGAGgtatgt---cattgtgaagtttgagcta-ctcagaata-atttggttgtgcctttcaatgaatgagctattttatatttgtacaattacccctctaatattttttgctttgcag
upper sequence: GRMZM2G100560_T01 (Zea mays), 5'ss of exon 4
lower sequence: AT3G49370.1 (Arabidopsis thaliana), 5'ss of exon 4
ATACAATGAAGGGGATGCAAAAATTATTGTTGAACAGATATTAAAAGTAGTTGCCTTTTGCCATCTTCAGGGTGTTGTTCACCGTGATCTGAAGCCAGAGgtatgtggact---ctgttaagtata-gtgtatcgcaaaatatgatttgtcgtggcgaaaaaaactgtagta-tattccttctgataatccacccttggatgtttttaacag
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ATATCCGGAAGCAGAAGCTAAGCGTATTCTTGTACAGATTTTATCTGCAACTGCTTTTTTCCATCTTCAAGGTGTTGTGCACCGTGATCTGAAACCGGAGgtacacacattgttcttctaccaatgtgaatatcataagtagttgttgcttctgtcttgaacaaatgccatactgttgtatccag---------------------------
upper sequence: GRMZM2G100560_T01 (Zea mays), 5'ss of exon 4
lower sequence: Vv16s0098g01140.t01 (Vitis vinifera), 5'ss of exon 4
ATACAATGAAGGGGATGCAAAAATTATTGTTGAACAGATATTAAAAGTAGTTGCCTTTTGCCATCTTCAGGGTGTTGTTCACCGTGATCTGAAGCCAGAGgtatgtggactctgttaagtatagtgtat-cgcaa--aatatgatt----tgtcgtg-gcgaaaaaaactg-tagtatattccttctgataatccaccct-tggatgtttttaacag-----------------------------------------------------------
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ATACAGAGAAGAAGATGCTAAAGCTATTGTTGTGCAAATTCTAAATGTGGTTGCCTTTTGTCATCTCCAAGGTGTTGTGCACCGTGATCTAAAACCAGAGgtat----agtctaatgaacataatatatatgttattaatttaactctattgttgtatatggaatgaactgatagtcttctgcttgc-acagtcaactgtgtgcttatgtgccattgtgtctaattgtcattcccactttcaacaaattactttatttacttctaattctctgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211246069|gb|FL212418.1|FL212418EST: TTGCCTTTTGCCATCTTCAGGGTGTTGTTCACCGTGATCTGAAGCCAGAG AATTTCTTATTCAGCACTAGGGAAGAGCATTCTCCTATGAAGATAATTGAT
genomic: TTGCCTTTTGCCATCTTCAGGGTGTTGTTCACCGTGATCTGAAGCCAGAGgtatgtggac ... tttttaacagAATTTCCTGTTTAGCACTAGGGAAGAGCATTCTCCTATGAAGATAATTGAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATACAATGAAGGGGATGCAAAAATTATTGTTGAACAGATATTAAAAGTAGTTGCCTTTTGCCATCTTCAGGGTGTTGTTCACCGTGATCTGAAGCCAGAGgtatgtggactctgttaagtatagtgtatcgcaaaatatgatttgtcgtggcgaaaaaaactgtagtatattccttctgataatccacccttggatgtttttaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC