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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctagcacctagctcactgcaccaggggaaaaatatgtcttgatctagattttatatttagtttgcaaaattcacctcattcctttgtttttctcttgcagATGACAACGGCAATATTTATTGAGGATGTGCGCAAAGAGGTGAAAATTTTGAAGGCGTTATCTGGACATTCCAATCTTGTCAAGTTTTATGATGCTTGTG

Basic information

species Zea mays
transcript GRMZM2G100560_T02
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G100560_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os10g36710.1 (Oryza sativa), 3'ss of exon 1
ctagcacctagctcactgcaccaggggaaaaatatgtcttgat-ctagat-tttatatttagtttgcaaaattcacctcattcctttgtttttctcttgcagATGACAACGGCAATATTTATTGAGGATGTGCGCAAAGAGGTGAAAATTTTGAAGGCGTTATCTGGACATTCCAATCTTGTCAAGTTTTATGATGCTTGTG
   |||| | ||  | |  |  ||  |    ||  ||  |  |  || || || | |||||  ||   ||  | | |||| |  | ||||  | | |  ||||||||||| |||||||  |||||||||||||| | ||||||||||||| ||||||| |||||||| ||||| ||||||||||| ||||||||||| ||||
--tgcacttggccaaataaaatagaagttctatgggttgtcctattacatattcacatttacctttggaacatgatctcaattttgtgttcctttttatcagATGACAACAGCAATATCAATTGAGGATGTGCGTAGAGAGGTGAAAATTCTGAAGGCTTTATCTGGGCATTCGAATCTTGTCAAATTTTATGATGCATGTG

upper sequence: GRMZM2G100560_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA06G13920.1 (Glycine max), 3'ss of exon 1
ctagcacctagctcactgcaccaggggaaaaatatgtcttgatctagattttatatttagtttgcaaaattcacctcattcctttgtttttctcttgcagATGACAACGGCAATATTTATTGAGGATGTGCGCAAAGAGGTGAAAATTTTGAAGGCGTTATCTGGACATTCCAATCTTGTCAAGTTTTATGATGCTTGTG
 ||  |  ||               |      |   |||     || | ||  |  ||  |    |   ||  | | |||   |  ||||| | | |||||||||  | |||||    || || ||||| || |  ||||| ||||| |||||||| ||||||||||||   ||| | ||||||||||||||||| | ||
atatgaattaatctttgattttcaagcttttgtgaatctcaccttaaaattcttgcttgataatgatggttatcgtaattaactgatttttgtatggcagATGACTTCAGCAATTGCAATCGAAGATGTACGGAGGGAGGTCAAAATGTTGAAGGCTTTATCTGGACATAAGAATTTGGTCAAGTTTTATGATGCATTTG

upper sequence: GRMZM2G100560_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA04G40920.1 (Glycine max), 3'ss of exon 1
-ctagcacctagctcactgcaccaggggaaaaatatgtcttgatctagattttatatttagtttgcaaaattcacctcattcctttgtttttctcttgcagATGACAACGGCAATATTTATTGAGGATGTGCGCAAAGAGGTGAAAATTTTGAAGGCGTTATCTGGACATTCCAATCTTGTCAAGTTTTATGATGCTTGTG
 | | || |  |      ||          ||   | | |  ||||    || | |||     |  | ||  | | | |||   |  ||||| | | |||||||||  | |||||    || || |||||  | |  ||||||||||| ||||| || ||||||||||||   ||| | ||||||||||||||||| | ||
tccatcaacatgaattaagctttgattttcaagcttttgtcaatctcaccttaaaattcttgcttgagaacac-cgtaattaactgatttttgtatggcagATGACTTCAGCAATTGCAATCGAAGATGTAAGGAGGGAGGTGAAAATGTTGAAAGCCTTATCTGGACATAAGAATTTGGTCAAGTTTTATGATGCATTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agattttatatttagtttgcaaaattcacctcattcctttgtttttctcttgcagATGACAACGGCAATATTTATTGAGGATGTGCGCAAAGAGGTGAAAATTTTGAAGGCGTTATCTGGACATTCCAATCTTGTCAAGTTTTATGATGCTTGTG
                        ttcacctcattccttt  CT-rich tract
     ttatatttagtttgca  TA-rich tract