Sequence
atgc intronic sequence ATGC exonic sequence...tggatagaatcttgtccaggtattacattttcttgagaaatcattttgcgaacgccactacaaggtgtagctttgttacagtactgtctgttttttgcagAGGTGGAAGATACAATGAAGGGGATGCAAAAATTATTGTTGAACAGATATTAAAAGTAGTTGCCTTTTGCCATCTTCAGGGTGTTGTTCACCGTGATCTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G100560_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os10g36710.1 (Oryza sativa), 3'ss of exon 3
tggatagaatcttgtccaggtattacattttcttgagaaatcattttgcgaacgccactacaaggtgtagctttgttacagtactgtctgttttttgcagAGGTGGAAGATACAATGAAGGGGATGCAAAAATTATTGTTGAACAGATATTAAAAGTAGTTGCCTTTTGCCATCTTCAGGGTGTTGTTCACCGTGATCTG
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-------------------gtattgtatttttcttgagaaacattttctgcaaaccaaaacaag-tatttcgctaatacagtgtcgcttgccctttttagAGGTGGGAGATACACTGAGGAAGATGCTAAAGTTATCGTTGAACAAATATTAAATGTTGTTTCTTTCTGCCATCTTCAAGGCGTTGTTCACCGTGATTTG
upper sequence: GRMZM2G100560_T02 (Zea mays), 3'ss of exon 3
lower sequence: Vv16s0098g01140.t01 (Vitis vinifera), 3'ss of exon 3
tggatagaatcttgt-ccaggtattacattttcttgagaaatcattttgcgaacgccactacaaggtgtagctt----tgttacagtactgtctgttttttgcagAGGTGGAAGATACAATGAAGGGGATGCAAAAATTATTGTTGAACAGATATTAAAAGTAGTTGCCTTTTGCCATCTTCAGGGTGTTGTTCACCGTGATCTG
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---gtaaacttgaatgctttattttctttgtactagtggtaacgcctagttt-tactatcagaaaatattatttgaagtaatacattgcattct-cctgttacagAGGTGGAAGATACAGAGAAGAAGATGCTAAAGCTATTGTTGTGCAAATTCTAAATGTGGTTGCCTTTTGTCATCTCCAAGGTGTTGTGCACCGTGATCTA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttgcgaacgccactacaaggtgtagctttgttacagtactgtctgttttttgcagAGGTGGAAGATACAATGAAGGGGATGCAAAAATTATTGTTGAACAGATATTAAAAGTAGTTGCCTTTTGCCATCTTCAGGGTGTTGTTCACCGTGATCTG
tctgtttttt CT-rich tract
tgtttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tggatagaatcttgtccaggtattacattttcttgagaaatcattttgcgaacgccactacaaggtgtagctttgttacagtactgtctgttttttgcagAGGTGGAAGATACAATGAAGGGGATGCAAAAATTATTGTTGAACAGATATTAAAAGTAGTTGCCTTTTGCCATCTTCAGGGTGTTGTTCACCGTGATCTG
- - - - - - - - - - - - - - tttcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - ccactac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtagct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgtctg