1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtattattttgctccattattttgatgtccaaccaattattttacaccaaattttagtgatcagcacctactttttttcgttcctctcctgttccagCTGCTGACCTATGGACGAAGAATTCCTACCCCAGAGCTTTTTGCAAGAATAGATGCTGTTGATGCAAGCACTGTGAAGCGTGTTGCAAACCGCTTCATCT
species | Zea mays |
transcript | GRMZM2G091563_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AACTCCACCTTGATGGTTCAACTGCTGTTGTCGAGGACATTGGCCGCCAG CTGCTGACCTATGGACGAAGAATTCCTACCCCAGAGCTTTTTGCAAGAATAEST: gi|30306632|gb|CD001305.1|CD001305
genomic: AACTCCACCTTGATGGTTCAACTGCTGTTGTCGAGGACATTGGCCGCCAGgtattatttt ... cctgttccagCTGCTGACCTATGGACGAAGAATTCCTACCCCAGAGCTTTTTGCAAGAATA
EST: AACTCCACCTTGATGGTTCAACTGCTGTTGTCGAGGACATTGGCCGCCAG CTGCTGACCTATGGACGAAGAATTCCTACCCCAGAGCTTTTTGCAAGAATAEST: gi|32164812|gb|CD670451.1|CD670451
genomic: AACTCCACCTTGATGGTTCAACTGCTGTTGTCGAGGACATTGGCCGCCAGgtattatttt ... cctgttccagCTGCTGACCTATGGACGAAGAATTCCTACCCCAGAGCTTTTTGCAAGAATA
EST: AACTCCACCTTGATGGTTCAACTGCTGTTGTCGAGGACATTGGCCGCCAG CTGCTGACCTATGGACGAAGAATTCCTACCCCAGAGCTTTTTGCAAGAATAEST: gi|60337054|gb|DN204027.1|DN204027
genomic: AACTCCACCTTGATGGTTCAACTGCTGTTGTCGAGGACATTGGCCGCCAGgtattatttt ... cctgttccagCTGCTGACCTATGGACGAAGAATTCCTACCCCAGAGCTTTTTGCAAGAATA
EST: AACTCCACCTTGATGGTTCAACTGCTGTTGTCGAGGACATTGGCCGCCAG CTGCTGACCTATGGACGAAGAATTCCTACCCCAGAGCTTTTTGCAAGAATAEST: gi|60339171|gb|DN206144.1|DN206144
genomic: AACTCCACCTTGATGGTTCAACTGCTGTTGTCGAGGACATTGGCCGCCAGgtattatttt ... cctgttccagCTGCTGACCTATGGACGAAGAATTCCTACCCCAGAGCTTTTTGCAAGAATA
EST: AACTCCACCTTGATGGTTCAACTGCTGTTGTCGAGGACATTGGCCGCCAG CTGCTGACCTATGGACGAAGAATTCCTACCCCAGAGCTTTTTGCAAGAATAEST: gi|4730783|gb|AI649949.1|AI649949
genomic: AACTCCACCTTGATGGTTCAACTGCTGTTGTCGAGGACATTGGCCGCCAGgtattatttt ... cctgttccagCTGCTGACCTATGGACGAAGAATTCCTACCCCAGAGCTTTTTGCAAGAATA
EST: AACTCCNCCTTGATGGTTCAACTGCTGTTGTCGAGGACATTGGCCGCCAG CTGCTGACCTATGGACGAAGAATTCCTACCCCAGAGCTTTTTGCAAGAATAEST: gi|31909603|gb|CD651001.1|CD651001
genomic: AACTCCACCTTGATGGTTCAACTGCTGTTGTCGAGGACATTGGCCGCCAGgtattatttt ... cctgttccagCTGCTGACCTATGGACGAAGAATTCCTACCCCAGAGCTTTTTGCAAGAATA
EST: AACTCCACCTTGATGGTTCAACTGCTGTTGTCGAGGACATTGGCCGCCAG CTGCTGACCTATGGACGAAGAATTCCTACCCCAGAGCTTTTTGCAAGAATAEST: gi|38688415|gb|CK145446.1|CK145446
genomic: AACTCCACCTTGATGGTTCAACTGCTGTTGTCGAGGACATTGGCCGCCAGgtattatttt ... cctgttccagCTGCTGACCTATGGACGAAGAATTCCTACCCCAGAGCTTTTTGCAAGAATA
EST: GCTGTTGTCGAGGACATTGGCCGCCAG CTGCTGACCTATGGACGAAGAATTCCTACCCCAGAGCTTTTTGCAAGAATAEST: gi|83279407|gb|DV943415.1|DV943415
genomic: GCTGTTGTCGAGGACATTGGCCGCCAGgtattatttt ... cctgttccagCTGCTGACCTATGGACGAAGAATTCCTACCCCAGAGCTTTTTGCAAGAATA
EST: AACTCCACCTTGATGGTTCAACTGCTGTTGTCGAGGACATTGGCCGCCAG CTGCTGACCTATGGACGAAGAATTCCTACCCCAGAGCTTTTTGCAAGAATAEST: gi|32848125|gb|CD987806.1|CD987806
genomic: AACTCCACCTTGATGGTTCAACTGCTGTTGTCGAGGACATTGGCCGCCAGgtattatttt ... cctgttccagCTGCTGACCTATGGACGAAGAATTCCTACCCCAGAGCTTTTTGCAAGAATA
EST: AACTCCACCTTGATGGTTCAACTACTGTTGTCGAGAACATTGGCCGCCAC CTCCTGACCTATGCACGAAGAATTCCTACCCCAGAGCTTTTTGCAAGAATAEST: gi|29544108|gb|CB604488.1|CB604488
genomic: AACTCCACCTTGATGGTTCAACTGCTGTTGTCGAGGACATTGGCCGCCAGgtattatttt ... cctgttccagCTGCTGACCTATGGACGAAGAATTCCTACCCCAGAGCTTTTTGCAAGAATA
EST: AACTCCNCCTTGATGGTTCAACTGCTGTTGTCGAGGACATTGGCCGCCAG CTGCTGACCTATGGACGAAGAATTCCTACCCCAGAGCTTTTTGCAAGAATAEST: gi|60355748|gb|DN222721.1|DN222721
genomic: AACTCCACCTTGATGGTTCAACTGCTGTTGTCGAGGACATTGGCCGCCAGgtattatttt ... cctgttccagCTGCTGACCTATGGACGAAGAATTCCTACCCCAGAGCTTTTTGCAAGAATA
EST: AACTCCACCTTGATGGTTCAACTGCTGTTGTCGAGGACATTGGCCGCCAG CTGCTGACCTATGGACGAAGAATTCCTACCCCAGAGCTTTTTGCAAGAATAEST: gi|87151703|gb|DY396492.1|DY396492
genomic: AACTCCACCTTGATGGTTCAACTGCTGTTGTCGAGGACATTGGCCGCCAGgtattatttt ... cctgttccagCTGCTGACCTATGGACGAAGAATTCCTACCCCAGAGCTTTTTGCAAGAATA
EST: GGACATTGGCCGCCAG CTGCTGACCTATGGACGAAGAATTCCTACCCCAGAGCTTTTTGCAAGAATAEST: gi|5895629|gb|AW036875.1|AW036875
genomic: GGACATTGGCCGCCAGgtattatttt ... cctgttccagCTGCTGACCTATGGACGAAGAATTCCTACCCCAGAGCTTTTTGCAAGAATA
EST: AACTCCACCTTGATGGTTCAACTGCTGTTGTCGAGGACATTGGCCGCCAG CTGCTGACCTATGGACGAAGAATTCCTACCCCAGAGCTTTTTGCAAGAATA
genomic: AACTCCACCTTGATGGTTCAACTGCTGTTGTCGAGGACATTGGCCGCCAGgtattatttt ... cctgttccagCTGCTGACCTATGGACGAAGAATTCCTACCCCAGAGCTTTTTGCAAGAATA
tacaccaaattttagtgatcagcacctactttttttcgttcctctcctgttccagCTGCTGACCTATGGACGAAGAATTCCTACCCCAGAGCTTTTTGCAAGAATAGATGCTGTTGATGCAAGCACTGTGAAGCGTGTTGCAAACCGCTTCATCT
cacctactttttttcg CT-rich tract
aaattttagt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattattttgctccattattttgatgtccaaccaattattttacaccaaattttagtgatcagcacctactttttttcgttcctctcctgttccagCTGCTGACCTATGGACGAAGAATTCCTACCCCAGAGCTTTTTGCAAGAATAGATGCTGTTGATGCAAGCACTGTGAAGCGTGTTGCAAACCGCTTCATCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC